4.5 Review

Mutations in spliceosomal proteins and retina degeneration

期刊

RNA BIOLOGY
卷 14, 期 5, 页码 544-552

出版社

TAYLOR & FRANCIS INC
DOI: 10.1080/15476286.2016.1191735

关键词

Retinitis pigmentosa; snRNP; splicing

资金

  1. Academy of Sciences of the Czech Republic [RVO68378050]
  2. 430 National Sustainability Program [I LO14119]

向作者/读者索取更多资源

A majority of human genes contain non-coding intervening sequences - introns that must be precisely excised from the pre-mRNA molecule. This event requires the coordinated action of five major small nuclear ribonucleoprotein particles (snRNPs) along with additional non-snRNP splicing proteins. Introns must be removed with nucleotidal precision, since even a single nucleotide mistake would result in a reading frame shift and production of a non-functional protein. Numerous human inherited diseases are caused by mutations that affect splicing, including mutations in proteins which are directly involved in splicing catalysis. One of the most common hereditary diseases associated with mutations in core splicing proteins is retinitis pigmentosa (RP). So far, mutations in more than 70genes have been connected to RP. While the majority of mutated genes are expressed specifically in the retina, eight target genes encode for ubiquitous core snRNP proteins (Prpf3, Prpf4, Prpf6, Prpf8, Prpf31, and SNRNP200/Brr2) and splicing factors (RP9 and DHX38). Why mutations in spliceosomal proteins, which are essential in nearly every cell in the body, causes a disease that displays such a tissue-specific phenotype is currently a mystery. In this review, we recapitulate snRNP functions, summarize the missense mutations which are found in spliceosomal proteins as well as their impact on protein functions and discuss specific models which may explain why the retina is sensitive to these mutations.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

The Sm-core mediates the retention of partially-assembled spliceosomal snRNPs in Cajal bodies until their full maturation

Adriana Roithova, Klara Klimesova, Josef Panek, Cindy L. Will, Reinhard Luehrmann, David Stanek, Cyrille Girard

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

PUF60-activated exons uncover altered 3′ splice-site selection by germline missense mutations in a single RRM

Jana Kralovicova, Ivana Sevcikova, Eva Stejskalova, Mina Obuca, Michael Hiller, David Stanek, Igor Vorechovsky

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5 splice-site sequences due to weak interactions with SR proteins

Zuzana Krchnakova, Prasoon Kumar Thakur, Michaela Krausova, Nicole Bieberstein, Nejc Haberman, Michaela Mueller-McNicoll, David Stanek

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Analysis of Spliceosomal snRNA Localization in Human Hela Cells Using Microinjection

Adriana Roithova, David Stanek

JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2019)

Article Biochemistry & Molecular Biology

DIS3L2 and LSm proteins are involved in the surveillance of Sm ring-deficient snRNAs

Adriana Roithova, Zuzana Feketova, Stepanka Vanacova, David Stanek

NUCLEIC ACIDS RESEARCH (2020)

Review Biochemical Research Methods

Long non-coding RNAs and splicing

David Stanek

Summary: This review focuses on the role of splicing in the life of long non-coding RNA (lncRNA), summarizing differences in splicing efficiency between protein-coding genes and lncRNAs. The discussion also highlights the conservation of splice sites in lncRNAs and suggests additional roles splicing may play in lncRNA metabolism. The hypothesis that splicing machinery can protect cells from undesired transcripts is also explored.

NON-CODING GENOME (2021)

Article Multidisciplinary Sciences

TSSC4 is a component of U5 snRNP that promotes tri-snRNP formation

Klara Klimesova, Jitka Vojackova, Nenad Radivojevic, Franck Vandermoere, Edouard Bertrand, Celine Verheggen, David Stanek

Summary: The study revealed that TSSC4 is a component of U5 snRNP and plays a critical role in promoting tri-snRNP formation, providing new insights into the biogenesis and recycling process of spliceosomal U5 snRNP.

NATURE COMMUNICATIONS (2021)

Article Cell Biology

A point mutation in human coilin prevents Cajal body formation

Davide A. Basello, A. Gregory Matera, David Stanek

Summary: This study reports an amino acid substitution found in a widely-used EGFP-coilin construct that has a dominant-negative effect on Cajal body formation. The results show that a mutation in the C-terminal region of human coilin can disrupt the assembly of Cajal bodies.

JOURNAL OF CELL SCIENCE (2022)

Article Multidisciplinary Sciences

Retinitis pigmentosa-linked mutation in DHX38 modulates its splicing activity

Mina Obuca, Zuzana Cvackova, Jan Kubovciak, Michal Kolar, David Stanek

Summary: This study analyzed the role of RNA helicase DHX38 in retinitis pigmentosa (RP). The findings showed that DHX38 is associated with key splicing factors, regulates alternative splicing and promotes the usage of cryptic splice sites. The RP-linked substitution G332D modulates DHX38's splicing activity.

PLOS ONE (2022)

Article Multidisciplinary Sciences

BRAT1 links Integrator and defective RNA processing with neurodegeneration

Zuzana Cihlarova, Jan Kubovciak, Margarita Sobol, Katerina Krejcikova, Jana Sachova, Michal Kolar, David Stanek, Cyril Barinka, Grace Yoon, Keith W. Caldecott, Hana Hanzlikova

Summary: Mutations in BRAT1 are associated with neurodevelopmental delay and neurodegeneration. This study reveals that BRAT1 is a component of Integrator and plays a crucial role in the processing of specific RNAs. The authors also demonstrate that patient-derived cells with BRAT1 mutations show reduced levels of the Integrator catalytic subunit and impaired RNA processing.

NATURE COMMUNICATIONS (2022)

Article Cell Biology

SART3 associates with a post-splicing complex

Klara Klimesova, Hana Petrzilkova, Cyril Barinka, David Stanek

Summary: SART3 is a multifunctional protein involved in multiple steps of gene expression, including the assembly and recycling of the spliceosomal U4/U6 snRNP. This study demonstrates that SART3 interacts with the 12S U2 snRNP through its N-terminal HAT domain. Furthermore, it associates with the post-splicing complex containing U2 and U5 snRNP components, and also interacts with the RNA helicase DHX15. The proposed model suggests that SART3 protects and initiates the recycling of U6 snRNA in the post-splicing complex.

JOURNAL OF CELL SCIENCE (2023)

Article Biology

Retinitis pigmentosa-associated mutations in mouse Prpf8 cause misexpression of circRNAs and degeneration of cerebellar granule cells

Michaela Krausova, Michaela Kreplova, Poulami Banik, Zuzana Cvackova, Jan Kubovciak, Martin Modrak, Dagmar Zudova, Jiri Lindovsky, Agnieszka Kubik-Zahorodna, Marcela Palkova, Michal Kolar, Jan Prochazka, Radislav Sedlacek, David Stanek

Summary: A subset of RP patients have mutations in spliceosomal components, including the PRPF8 protein. Two alleles of murine Prpf8 were created to mimic these aberrant PRPF8 mutations. Homozygous mice expressing the aberrant Prpf8 variants developed progressive cerebellar atrophy due to granule cell loss, and circRNAs were deregulated in their cerebellum. The down-regulation of splicing proteins coincided with neurodegeneration onset and was more pronounced in mouse strains expressing mutated Prpf8. These findings suggest that the deregulation of circRNAs triggers neuronal death in RP patients.

LIFE SCIENCE ALLIANCE (2023)

Article Multidisciplinary Sciences

The SMN complex drives structural changes in human snRNAs to enable snRNP assembly

Josef Panek, Adriana Roithova, Nenad Radivojevic, Michal Sykora, Archana Bairavasundaram Prusty, Nicholas Huston, Han Wan, Anna Marie Pyle, Utz Fischer, David Stanek

Summary: This study reveals that pre-snRNAs have compact structures that prevent binding with Sm proteins during spliceosomal snRNP maturation. Gemin3 and Gemin4 are necessary for rearranging pre-snRNAs to allow interaction with Sm proteins.

NATURE COMMUNICATIONS (2023)

Review Cell Biology

Coilin and Cajal bodies

David Stanek

Summary: The nucleus of higher eukaryotes contains structures that concentrate specific biomolecules and play various roles in nuclear metabolism. This review focuses on coilin and Cajal bodies, which are involved in the metabolism of non-coding nuclear RNAs. However, there is still limited understanding of the structure and function of coilin, and a comprehensive model for the origin of Cajal bodies is lacking. Recent results on Cajal bodies and coilin are summarized and discussed in the context of previous research in this field.

NUCLEUS (2023)

Article Cell Biology

A novel SATB1 protein isoform with different biophysical properties

Tomas Zelenka, Dionysios-Alexandros Papamatheakis, Petros Tzerpos, Giorgos Panagopoulos, Konstantinos C. Tsolis, Vassilis M. Papadakis, Dimitris Mariatos Metaxas, George Papadogkonas, Eleftherios Mores, Manouela Kapsetaki, Joseph Papamatheakis, David Stanek, Charalampos Spilianakis

Summary: In this report, the regulatory actions of SATB1 genome organizer in intra-thymic T cell development were explored. The study found that both transcription and splicing were deregulated in Satb1 knockout murine thymocytes. Moreover, a novel SATB1 protein isoform with distinct biophysical behavior was characterized, suggesting potential functional differences compared to the commonly studied isoform.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2023)

暂无数据