Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor

A Comprehensive Transcriptomic and Proteomic Analysis of Hydra Head Regeneration

(2015) Hendrik O. Petersen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multidimensional proteomics for cell biology

(2015) Mark Larance et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications

(2015) Tatjana Sajic et al.   Proteomics Clinical Applications

Label-free Quantitative Analysis of Changes in Broiler Liver Proteins under Heat Stress using SWATH-MS Technology

(2015) Xiangfang Tang et al.   Scientific Reports

Correlation of mRNA and protein abundance in the developing maize leaf

(2014) Lalit Ponnala et al.   PLANT JOURNAL

Whole cell, label free protein quantitation with data independent acquisition: Quantitation at the MS2 level

(2014) Peter McQueen et al.   PROTEOMICS

The cuticle and plant defense to pathogens

(2014) Mario Serrano et al.   Frontiers in Plant Science

Western BlotsversusSelected Reaction Monitoring Assays: Time to Turn the Tables?

(2013) Ruedi Aebersold et al.   MOLECULAR & CELLULAR PROTEOMICS

The Formation and Function of Plant Cuticles

(2013) T. H. Yeats et al.   PLANT PHYSIOLOGY

Mass Spectrometry–Based Proteomics and Network Biology

(2012) Ariel Bensimon et al.   Annual Review of Biochemistry

Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline

(2012) Birgit Schilling et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

The identification of cutin synthase: formation of the plant polyester cutin

(2012) Trevor H Yeats et al.   Nature Chemical Biology

Selected reaction monitoring–based proteomics: workflows, potential, pitfalls and future directions

(2012) Paola Picotti et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Pleiotropic Phenotypes of the sticky peel Mutant Provide New Insight into the Role of CUTIN DEFICIENT2 in Epidermal Cell Function in Tomato

(2012) S. S. Nadakuduti et al.   PLANT PHYSIOLOGY

Comparative characterization of the glycosylation profiles of an influenza hemagglutinin produced in plant and insect hosts

(2012) Sheng Zhang et al.   PROTEOMICS

mProphet: automated data processing and statistical validation for large-scale SRM experiments

(2011) Lukas Reiter et al.   NATURE METHODS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

The Arabidopsis eukaryotic translation initiation factor 3, subunit F (AteIF3f), is required for pollen germination and embryogenesis

(2010) Chuan Xia et al.   PLANT JOURNAL

Cellular processes relying on sterol function in plants

(2009) Yohann Boutté et al.   CURRENT OPINION IN PLANT BIOLOGY

Absolute quantification ofDehalococcoidesproteins: enzyme bioindicators of chlorinated ethene dehalorespiration

(2009) Jeffrey J. Werner et al.   ENVIRONMENTAL MICROBIOLOGY

Cutin deficiency in the tomato fruit cuticle consistently affects resistance to microbial infection and biomechanical properties, but not transpirational water loss

(2009) Tal Isaacson et al.   PLANT JOURNAL

Targeted proteomic strategy for clinical biomarker discovery

(2008) Ralph Schiess et al.   Molecular Oncology

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

If the antibody fails - a mass Western approach

(2008) Ute Lehmann et al.   PLANT JOURNAL