Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross

Parent–progeny sequencing indicates higher mutation rates in heterozygotes

(2015) Sihai Yang et al.   NATURE

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Allopolyploidization is Not So Simple: Evidence from the Origin of the Tribe Cyprinini (Teleostei: Cypriniformes)

(2014) W. Ma et al.   CURRENT MOLECULAR MEDICINE

Visualization of the spatial and temporal dynamics of MAPK signaling using fluorescence imaging techniques

(2014) Taichiro Tomida   Journal of Physiological Sciences

Genome-Wide Disruption of Gene Expression in Allopolyploids but Not Hybrids of Rice Subspecies

(2014) Chunming Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Synergism between Adaptive Effects and Evolvability Drives Whole Genome Duplication to Fixation

(2014) Thomas D. Cuypers et al.   PLoS Computational Biology

Comparative cytological and transcriptomic analysis of pollen development in autotetraploid and diploid rice

(2014) Jinwen Wu et al.   Plant Reproduction

The formation of diploid and triploid hybrids of female grass carp × male blunt snout bream and their 5S rDNA analysis

(2013) Weiguo He et al.   BMC GENETICS

Model of gene expression in extreme cold - reference transcriptome for the high-Antarctic cryopelagic notothenioid fish Pagothenia borchgrevinki

(2013) Kevin T Bilyk et al.   BMC GENOMICS

Use of digital gene expression to discriminate gene expression differences in early generations of resynthesized Brassica napus and its diploid progenitors

(2013) Jinjin Jiang et al.   BMC GENOMICS

Polyploidy in Animals: Effects of Gene Expression on Sex Determination, Evolution and Ecology

(2013) B. Wertheim et al.   CYTOGENETIC AND GENOME RESEARCH

In vivo mutation of pre-mRNA processing factor 8 (Prpf8) affects transcript splicing, cell survival and myeloid differentiation

(2013) Maria-Cristina Keightley et al.   FEBS LETTERS

Polyploids and hybrids in changing environments: winners or losers in the struggle for adaptation?

(2013) B K Mable   HEREDITY

Alterations and Abnormal Mitosis of Wheat Chromosomes Induced by Wheat-Rye Monosomic Addition Lines

(2013) Shulan Fu et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

(2012) Richard J.A. Buggs et al.   CURRENT BIOLOGY

Redundancy and rewiring of genetic networks following genome-wide duplication events

(2012) Riet De Smet et al.   CURRENT OPINION IN PLANT BIOLOGY

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genomic and transcriptomic alterations following hybridisation and genome doubling in trigenomic allohexaploid Brassica carinata × Brassica rapa

(2012) Y. Xu et al.   PLANT BIOLOGY

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

The Transcript-centric Mutations in Human Genomes

(2012) Peng Cui et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

Increased expression of histone demethylase JHDM1D under nutrient starvation suppresses tumor growth via down-regulating angiogenesis

(2011) T. Osawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic analyses of the SMYD family interactomes identify HSP90 as a novel target for SMYD2

(2011) Mohamed Abu-Farha et al.   Journal of Molecular Cell Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The ploidy conveyor of mature hepatocytes as a source of genetic variation

(2010) Andrew W. Duncan et al.   NATURE

Distant hybridization leads to different ploidy fishes

(2010) ShaoJun Liu   Science China-Life Sciences

Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs

(2010) Margaret R. Woodhouse et al.   PLOS BIOLOGY

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Ploidy and the Causes of Genomic Evolution

(2009) A. C. Gerstein et al.   JOURNAL OF HEREDITY

RAD18 transmits DNA damage signalling to elicit homologous recombination repair

(2009) Jun Huang et al.   NATURE CELL BIOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Cip/Kip cyclin-dependent protein kinase inhibitors and the road to polyploidy

(2009) Zakir Ullah et al.   Cell Division

Mre11-Rad50 Promotes Rapid Repair of DNA Damage in the Polyploid Archaeon Haloferax volcanii by Restraining Homologous Recombination

(2009) Stéphane Delmas et al.   PLoS Genetics

Genomic Clues to the Evolutionary Success of Polyploid Plants

(2008) Matthew J. Hegarty et al.   CURRENT BIOLOGY

Formation and Longevity of Chimeric and Duplicate Genes in Drosophila melanogaster

(2008) R. L. Rogers et al.   GENETICS

Current Topics in DNA Double-Strand Break Repair

(2008) Junya KOBAYASHI et al.   JOURNAL OF RADIATION RESEARCH

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH