Modifications to aLATE MERISTEM IDENTITY1gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutumL.)

Major Leaf Shape Genes, Laciniate in Diploid Cotton and Okra in Polyploid Upland Cotton, Map to an Orthologous Genomic Region

(2016) Baljinder Kaur et al.   CROP SCIENCE

The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation

(2016) Moritz Jöst et al.   CURRENT BIOLOGY

Evolutionary and Environmental Forces Sculpting Leaf Development

(2016) Daniel H. Chitwood et al.   CURRENT BIOLOGY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Integrated mapping and characterization of the gene underlying the okra leaf trait inGossypium hirsutumL

(2015) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data

(2015) Kris Sankaran et al.   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Repeated Evolutionary Changes of Leaf Morphology Caused by Mutations to a Homeobox Gene

(2014) Adrien Sicard et al.   CURRENT BIOLOGY

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene

(2014) D. Vlad et al.   SCIENCE

Mapping QTLs for traits related to phenology, morphology and yield components in an inter-specific Gossypium hirsutum×G. barbadense cotton RIL population

(2013) Jean-Marc Lacape et al.   FIELD CROPS RESEARCH

A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines

(2013) D. H. Chitwood et al.   PLANT CELL

Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.)

(2013) Priyanka Tyagi et al.   THEORETICAL AND APPLIED GENETICS

Mapping and genomic targeting of the major leaf shape gene (L) in Upland cotton (Gossypium hirsutum L.)

(2013) Ryan J. Andres et al.   THEORETICAL AND APPLIED GENETICS

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Method: low-cost delivery of the cotton leaf crumple virus-induced gene silencing system

(2012) John Tuttle et al.   Plant Methods

The evolution and functional significance of leaf shape in the angiosperms

(2011) Adrienne B. Nicotra et al.   FUNCTIONAL PLANT BIOLOGY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Virus-induced gene silencing can persist for more than 2 years and also be transmitted to progeny seedlings in Nicotiana benthamiana and tomato

(2011) Muthappa Senthil-Kumar et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

(2010) Sinara Artico et al.   BMC PLANT BIOLOGY

Arabidopsis thaliana Leaf Form Evolved via Loss of KNOX Expression in Leaves in Association with a Selective Sweep

(2010) Paolo Piazza et al.   CURRENT BIOLOGY

A ubiquitin-10 promoter-based vector set for fluorescent protein tagging facilitates temporal stability and native protein distribution in transient and stable expression studies

(2010) Christopher Grefen et al.   PLANT JOURNAL

Defining the boundaries: structure and function of LOB domain proteins

(2010) Christine Majer et al.   TRENDS IN PLANT SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transient expression inNicotiana benthamianafluorescent marker lines provides enhanced definition of protein localization, movement and interactionsin planta

(2009) Kathleen Martin et al.   PLANT JOURNAL

Natural Variation in Leaf Morphology Results from Mutation of a Novel KNOX Gene

(2008) Seisuke Kimura et al.   CURRENT BIOLOGY

Geminivirus-Mediated Gene Silencing from Cotton Leaf Crumple Virus Is Enhanced by Low Temperature in Cotton

(2008) J. R. Tuttle et al.   PLANT PHYSIOLOGY