A Parallel Population Genomic and Hydrodynamic Approach to Fishery Management of Highly-Dispersive Marine Invertebrates: The Case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera

Fishing for divergence in a sea of connectivity: The utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera

(2016) Monal M. Lal et al.   Marine Genomics

Keeping It Local: Dispersal Limitations of Coral Larvae to the High Latitude Coral Reefs of the Houtman Abrolhos Islands

(2016) Kathryn L. Markey et al.   PLoS One

Gill Development and Its Functional and Evolutionary Implications in the Blue Mussel Mytilus edulis (Bivalvia: Mytilidae)

(2016) Rozenn Cannuel et al.   BIOLOGICAL BULLETIN

Effects of habitat fragmentation on the genetic structure and connectivity of the black-lipped pearl oyster Pinctada margaritifera populations in French Polynesia

(2014) Sarah Lemer et al.   MARINE BIOLOGY

Recent novel approaches for population genomics data analysis

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Genome-wide single-generation signatures of local selection in the panmictic European eel

(2014) J. M. Pujolar et al.   MOLECULAR ECOLOGY

Larval Dispersal Modeling of Pearl Oyster Pinctada margaritifera following Realistic Environmental and Biological Forcing in Ahe Atoll Lagoon

(2014) Yoann Thomas et al.   PLoS One

Modelling dispersal and connectivity of broadcast spawning corals at the global scale

(2013) S. Wood et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Ocean currents influence the genetic structure of an intertidal mollusc in southeastern Australia - implications for predicting the movement of passive dispersers across a marine biogeographic barrier

(2013) Adam D. Miller et al.   Ecology and Evolution

Donor-oyster derived heritability estimates and the effect of genotype×environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima

(2012) Dean R. Jerry et al.   AQUACULTURE

GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies

(2012) S. M. Gogarten et al.   BIOINFORMATICS

Understanding age-specific dispersal in fishes through hydrodynamic modelling, genetic simulations and microsatellite DNA analysis

(2012) OLIVER BERRY et al.   MOLECULAR ECOLOGY

Translocation of wild populations: conservation implications for the genetic diversity of the black-lipped pearl oysterPinctada margaritifera

(2012) SARAH LEMER et al.   MOLECULAR ECOLOGY

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

(2012) MORTEN T. LIMBORG et al.   MOLECULAR ECOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Multiple SNP Markers Reveal Fine-Scale Population and Deep Phylogeographic Structure in European Anchovy (Engraulis encrasicolus L.)

(2012) Iratxe Zarraonaindia et al.   PLoS One

NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation

(2012) Markus Neuditschko et al.   PLoS One

Genetic change for earlier migration timing in a pink salmon population

(2012) R. P. Kovach et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Correction Method for Null Alleles in Species with Variable Microsatellite Flanking Regions, A Case Study of the Black-Lipped Pearl Oyster Pinctada margaritifera

(2011) Sarah Lemer et al.   JOURNAL OF HEREDITY

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Population and family growth response to different rearing location, heritability estimates and genotype×environment interaction in the silver-lip pearl oyster (Pinctada maxima)

(2010) Renate Kvingedal et al.   AQUACULTURE

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Detecting population structure in a high gene-flow species, Atlantic herring (Clupea harengus): direct, simultaneous evaluation of neutral vs putatively selected loci

(2010) C André et al.   HEREDITY

Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod

(2010) H. KNUTSEN et al.   MOLECULAR ECOLOGY

Rhh: an R extension for estimating multilocus heterozygosity and heterozygosity-heterozygosity correlation

(2010) JUSSI S. ALHO et al.   Molecular Ecology Resources

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges

(2009) G. P. Jones et al.   CORAL REEFS

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

(2009) Oscar E. Gaggiotti et al.   EVOLUTION

Genetic population structure of marine fish: mismatch between biological and fisheries management units

(2009) Henning Reiss et al.   FISH AND FISHERIES

Population genetics, larval dispersal, and connectivity in marine systems

(2009) K Weersing et al.   MARINE ECOLOGY PROGRESS SERIES

Local selection and population structure in a deep-sea fish, the roundnose grenadier (Coryphaenoides rupestris)

(2009) THOMAS A. WHITE et al.   MOLECULAR ECOLOGY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Family by environment interactions in shell size of 43-day old silver-lip pearl oyster (Pinctada maxima), five families reared under different nursery conditions

(2008) Renate Kvingedal et al.   AQUACULTURE

Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima)

(2008) Curtis E. Lind et al.   AQUACULTURE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Integrating genetic data into management of marine resources: how can we do it better?

(2008) Robin S Waples et al.   FISH AND FISHERIES

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness

(2008) Sophie Arnaud-Haond et al.   MARINE BIOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

The stochastic nature of larval connectivity among nearshore marine populations

(2008) D. A. Siegel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources