Stepwise Evolution of Coral Biomineralization Revealed with Genome-Wide Proteomics and Transcriptomics

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Biomineralization in newly settled recruits of the scleractinian coralPocillopora damicornis

(2014) Melany Gilis et al.   JOURNAL OF MORPHOLOGY

Structural Molecular Components of Septate Junctions in Cnidarians Point to the Origin of Epithelial Junctions in Eukaryotes

(2014) Philippe Ganot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata

(2014) T. Mass et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution and future of carbonate precipitation in marine invertebrates: Witnessing extinction or documenting resilience in the Anthropocene?

(2014) Jeana L. Drake et al.   Elementa-Science of the Anthropocene

Diet1 Functions in the FGF15/19 Enterohepatic Signaling Axis to Modulate Bile Acid and Lipid Levels

(2013) Laurent Vergnes et al.   Cell Metabolism

Yolk Formation in a Stony CoralEuphyllia ancora(Cnidaria, Anthozoa): Insight Into the Evolution of Vitellogenesis in Nonbilaterian Animals

(2013) Shinya Shikina et al.   ENDOCRINOLOGY

The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling

(2013) Paula Ramos-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biomineralization toolkit: The importance of sample cleaning prior to the characterization of biomineral proteomes

(2013) P. Ramos-Silva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reply to Ramos-Silva et al.: Regarding coral skeletal proteome

(2013) J. L. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata

(2013) J. L. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Diversity of Shell Matrix Proteins: Genome-Wide Investigation of the Pearl Oyster,Pinctada fucata

(2013) Hiroshi Miyamoto et al.   ZOOLOGICAL SCIENCE

Multi-Copper Oxidases and Human Iron Metabolism

(2013) Ganna Vashchenko et al.   Nutrients

A Surface Glycoprotein Indispensable for Gamete Fusion in the Social Amoeba Dictyostelium discoideum

(2012) Yoshinori Araki et al.   EUKARYOTIC CELL

A Comparative Study of the Shell Matrix Protein Aspein in Pterioid Bivalves

(2012) Yukinobu Isowa et al.   JOURNAL OF MOLECULAR EVOLUTION

Structural and functional diversity of cadherin at the adherens junction

(2011) Hiroki Oda et al.   JOURNAL OF CELL BIOLOGY

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Coral Reefs and Ocean Acidification

(2011) Joan Kleypas et al.   OCEANOGRAPHY

The Skeletal Organic Matrix from Mediterranean Coral Balanophyllia europaea Influences Calcium Carbonate Precipitation

(2011) Stefano Goffredo et al.   PLoS One

Cell-Cell Adhesion in the Cnidaria: Insights Into the Evolution of Tissue Morphogenesis

(2010) Craig R. Magie et al.   BIOLOGICAL BULLETIN

The catenin family at a glance

(2010) P. D. McCrea et al.   JOURNAL OF CELL SCIENCE

Identification of Zyklopen, a New Member of the Vertebrate Multicopper Ferroxidase Family, and Characterization in Rodents and Human Cells

(2010) Huijun Chen et al.   JOURNAL OF NUTRITION

New Insights into the Evolution of Metazoan Cadherins

(2010) P. Hulpiau et al.   MOLECULAR BIOLOGY AND EVOLUTION

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Biomineralization in Humans: Making the Hard Choices in Life

(2009) Kazuhiko Kawasaki et al.   Annual Review of Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora

(2009) Alejandro Reyes-Bermudez et al.   BMC EVOLUTIONARY BIOLOGY

Comprehensive Egg Coat Proteome of the AscidianCiona intestinalisReveals Gamete Recognition Molecules Involved in Self-sterility

(2009) Lixy Yamada et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sox genes in the coral Acropora millepora: divergent expression patterns reflect differences in developmental mechanisms within the Anthozoa

(2008) Chuya Shinzato et al.   BMC EVOLUTIONARY BIOLOGY

The cell-cell adhesion molecule E-cadherin

(2008) F. van Roy et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Architecture of the large membrane-bound mucins

(2008) Jean-Luc Desseyn et al.   GENE

The Premetazoan Ancestry of Cadherins

(2008) Monika Abedin et al.   SCIENCE