Identification of Bari Transposons in 23 Sequenced Drosophila Genomes Reveals Novel Structural Variants, MITEs and Horizontal Transfer

VHICA, a New Method to Discriminate between Vertical and Horizontal Transposon Transfer: Application to theMarinerFamily withinDrosophila

(2015) Gabriel Luz Wallau et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus

(2014) Gabriel Wallau et al.   BMC GENOMICS

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

The Drosophila mojavensis Bari3 transposon: distribution and functional characterization

(2014) Antonio Palazzo et al.   Mobile DNA

Horizontal transfer of transposons between and within crustaceans and insects

(2014) Mathilde Dupeyron et al.   Mobile DNA

Next-Generation Sequencing Platforms

(2013) Elaine R. Mardis   Annual Review of Analytical Chemistry

Linking Genomics and Ecology to Investigate the Complex Evolution of an Invasive Drosophila Pest

(2013) Lino Ometto et al.   Genome Biology and Evolution

FlyBase 102—advanced approaches to interrogating FlyBase

(2013) Susan E. St. Pierre et al.   NUCLEIC ACIDS RESEARCH

Functional Characterization of the Bari1 Transposition System

(2013) Antonio Palazzo et al.   PLoS One

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

(2013) V. Zanni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome of Drosophila suzukii , the Spotted Wing Drosophila

(2013) Joanna C. Chiu et al.   G3-Genes Genomes Genetics

Ancestral polymorphism and recent invasion of transposable elements in Drosophila species

(2012) Elaine Dias et al.   BMC EVOLUTIONARY BIOLOGY

Losing identity: structural diversity of transposable elements belonging to different classes in the genome of Anopheles gambiae

(2012) Rita D Fernández-Medina et al.   BMC GENOMICS

Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans

(2012) Qi Zhou et al.   BMC GENOMICS

The role of vertical and horizontal transfer in the evolution of Paris-like elements in drosophilid species

(2012) Gabriel Luz Wallau et al.   GENETICA

Horizontal Transposon Transfer in Eukarya: Detection, Bias, and Perspectives

(2012) Gabriel Luz Wallau et al.   Genome Biology and Evolution

Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster

(2012) B. He et al.   GENOME RESEARCH

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Sex-Specific Adaptation Drives Early Sex Chromosome Evolution in Drosophila

(2012) Q. Zhou et al.   SCIENCE

Horizontal transfers of Mariner transposons between mammals and insects

(2012) Sarah G Oliveira et al.   Mobile DNA

msechBari, a new MITE-like element in Drosophila sechellia related to the Bari transposon

(2011) ELAINE SILVA DIAS et al.   Genetics Research

Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa

(2011) C. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

(2011) Y.-W. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Molecular domestication of transposable elements: From detrimental parasites to useful host genes

(2009) L. Sinzelle et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Revisiting horizontal transfer of transposable elements in Drosophila

(2008) E L S Loreto et al.   HEREDITY

Multiple invasions of Errantivirus in the genus Drosophila

(2008) A. Ludwig et al.   INSECT MOLECULAR BIOLOGY

Conserved motifs and dynamic aspects of the terminal inverted repeat organization within Bari-like transposons

(2008) Roberta Moschetti et al.   MOLECULAR GENETICS AND GENOMICS

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS