Consequences of Secondary Calibrations on Divergence Time Estimates

The impact of calibration and clock-model choice on molecular estimates of divergence times

(2014) Sebastián Duchêne et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology

(2014) Christy A. Hipsley et al.   Frontiers in Genetics

Influence of the geological history of the Trans-Mexican Volcanic Belt on the diversification ofNolina parviflora(Asparagaceae: Nolinoideae)

(2013) Eduardo Ruiz-Sanchez et al.   JOURNAL OF BIOGEOGRAPHY

Comparative phylogeography of the Smilax hispida group (Smilacaceae) in eastern Asia and North America – Implications for allopatric speciation, causes of diversity disparity, and origins of temperate elements in Mexico

(2013) Yunpeng Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic position, origin and biogeography of Palearctic and Socotran blind-snakes (Serpentes: Typhlopidae)

(2013) P. Kornilios et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Ecological Opportunity and Incumbency in the Diversification of Repeated Continental Colonizations by Muroid Rodents

(2013) John J. Schenk et al.   SYSTEMATIC BIOLOGY

Congruence test of molecular clock calibration hypotheses based on Bayes factor comparisons

(2013) Carmelo Andújar et al.   Methods in Ecology and Evolution

Biogeographical diversification ofMentzeliasectionBartoniain western North America

(2012) John J. Schenk   JOURNAL OF BIOGEOGRAPHY

Did geckos ride the Palawan raft to the Philippines?

(2012) Cameron D. Siler et al.   JOURNAL OF BIOGEOGRAPHY

The unbearable uncertainty of Bayesian divergence time estimation

(2012) Mario DOS REIS et al.   Journal of Systematics and Evolution

DEALING WITH INCOMPLETE TAXON SAMPLING AND DIVERSIFICATION OF A LARGE CLADE OF MUSHROOM-FORMING FUNGI

(2011) Martin Ryberg et al.   EVOLUTION

Exploring Patterns and Extent of Bias in Estimating Divergence Time from Mitochondrial DNA Sequence Data in a Particular Lineage: A Case Study of Salamanders (Order Caudata)

(2011) Y. Zheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)

(2011) Hervé Sauquet et al.   SYSTEMATIC BIOLOGY

Best Practices for Justifying Fossil Calibrations

(2011) James F. Parham et al.   SYSTEMATIC BIOLOGY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

A time-calibrated phylogenetic approach to assessing the phylogeography, colonization history and phenotypic evolution of snakes in the Japanese Izu Islands

(2010) Takeo Kuriyama et al.   JOURNAL OF BIOGEOGRAPHY

Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms

(2010) Susana Magallón   SYSTEMATIC BIOLOGY

Effects of Substitution Models on Divergence Time Estimates: Simulations and an Empirical Study of Model Uncertainty Using Cornales

(2010) John J. Schenk et al.   SYSTEMATIC BOTANY

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

(2009) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

A Simple Method for Bracketing Absolute Divergence Times on Molecular Phylogenies Using Multiple Fossil Calibration Points

(2008) Charles R. Marshall   AMERICAN NATURALIST

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

(2008) Matthew J. Phillips   GENE

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY