Gene Expression Dynamics Accompanying the Sponge Thermal Stress Response

Sterol and genomic analyses validate the sponge biomarker hypothesis

(2016) David A. Gold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate change disables coral bleaching protection on the Great Barrier Reef

(2016) T. D. Ainsworth et al.   SCIENCE

Comparative transcriptome analysis reveals insights into the streamlined genomes of haplosclerid demosponges

(2016) Christine Guzman et al.   Scientific Reports

Global conservation status of sponges

(2015) James J. Bell et al.   CONSERVATION BIOLOGY

Temperature-induced behavioral switches in a bacterial coral pathogen

(2015) Melissa Garren et al.   ISME Journal

Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity

(2015) Federico Gaiti et al.   MOLECULAR BIOLOGY AND EVOLUTION

The hidden biology of sponges and ctenophores

(2015) Casey W. Dunn et al.   TRENDS IN ECOLOGY & EVOLUTION

Increased seawater temperature increases the abundance and alters the structure of natural Vibrio populations associated with the coral Pocillopora damicornis

(2015) Jessica Tout et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The cumulative impact of annual coral bleaching can turn some coral species winners into losers

(2014) Andréa G. Grottoli et al.   GLOBAL CHANGE BIOLOGY

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Host rules: spatial stability of bacterial communities associated with marine sponges (Irciniaspp.) in the Western Mediterranean Sea

(2013) Lucía Pita et al.   FEMS MICROBIOLOGY ECOLOGY

Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress

(2013) Lu Fan et al.   ISME Journal

A complex life cycle in a warming planet: gene expression in thermally stressed sponges

(2013) N. Webster et al.   MOLECULAR ECOLOGY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

(2013) Jeremie Vidal-Dupiol et al.   PLoS One

Tolerance of Sponge Assemblages to Temperature Anomalies: Resilience and Proliferation of Sponges following the 1997–8 El-Niño Southern Oscillation

(2013) Francisco Kelmo et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caspase Functions in Cell Death and Disease

(2013) D. R. McIlwain et al.   Cold Spring Harbor Perspectives in Biology

Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance

(2012) Patrick M. Erwin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions

(2012) Cecilia Conaco et al.   BMC GENOMICS

Effects of seawater temperature and pH on the boring rates of the sponge Cliona celata in scallop shells

(2012) Alan R. Duckworth et al.   MARINE BIOLOGY

Effects of water temperature and pH on growth and metabolite biosynthesis of coral reef sponges

(2012) AR Duckworth et al.   MARINE ECOLOGY PROGRESS SERIES

The transcriptomic response to thermal stress is immediate, transient and potentiated by ultraviolet radiation in the sea anemoneAnemonia viridis

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Reference-free transcriptome assembly in non-model animals from next-generation sequencing data

(2012) V. CAHAIS et al.   Molecular Ecology Resources

Trends in the Discovery of New Marine Natural Products from Invertebrates over the Last Two Decades – Where and What Are We Bioprospecting?

(2012) Miguel Costa Leal et al.   PLoS One

Expression of Putative Immune Response Genes during Early Ontogeny in the Coral Acropora millepora

(2012) Eneour Puill-Stephan et al.   PLoS One

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

Sponge-Microbe Associations Survive High Nutrients and Temperatures

(2012) Rachel Simister et al.   PLoS One

Functionalization of a protosynaptic gene expression network

(2012) C. Conaco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sponge Mass Mortalities in a Warming Mediterranean Sea: Are Cyanobacteria-Harboring Species Worse Off?

(2011) Emma Cebrian et al.   PLoS One

Evidence for glutamate, GABA and NO in coordinating behaviour in the sponge, Ephydatia muelleri (Demospongiae, Spongillidae)

(2010) G. R. D. Elliott et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

The ubiquitin-editing enzyme A20 (TNFAIP3) is a central regulator of immunopathology

(2009) Lars Vereecke et al.   TRENDS IN IMMUNOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation

(2008) Georg Hemmrich et al.   BIOESSAYS

The effect of temperature on larval pre-settlement duration and metamorphosis for the sponge, Rhopaloeides odorabile

(2008) S. Whalan et al.   CORAL REEFS

The functional roles of marine sponges

(2008) James J. Bell   ESTUARINE COASTAL AND SHELF SCIENCE

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Bleaching and stress in coral reef ecosystems:hsp70expression by the giant barrel spongeXestospongia muta

(2008) SUSANNA LÓPEZ-LEGENTIL et al.   MOLECULAR ECOLOGY

The COP9 signalosome: more than a protease

(2008) N WEI et al.   TRENDS IN BIOCHEMICAL SCIENCES