Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developingArabidopsis thalianaembryos

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

(2015) Delasa Aghamirzaie et al.   BMC GENOMICS

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

TRANSPARENT TESTA GLABRA1Regulates the Accumulation of Seed Storage Reserves in Arabidopsis

(2015) Mingxun Chen et al.   PLANT PHYSIOLOGY

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

(2014) Vijaykumar Veerappan et al.   BMC PLANT BIOLOGY

Endoplasmic Reticulum-associated Inactivation of the Hormone Jasmonoyl-l-Isoleucine by Multiple Members of the Cytochrome P450 94 Family inArabidopsis

(2014) Abraham J. Koo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Isotopically nonstationary13C flux analysis of changes inArabidopsis thalianaleaf metabolism due to high light acclimation

(2014) Fangfang Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

High-level expression of sugar inducible gene2 (HSI2) is a negative regulator of drought stress tolerance in Arabidopsis

(2013) Nirmala Sharma et al.   BMC PLANT BIOLOGY

VAL- and AtBMI1-Mediated H2Aub Initiate the Switch from Embryonic to Postgerminative Growth in Arabidopsis

(2013) Chao Yang et al.   CURRENT BIOLOGY

HISTONE DEACETYLASE19 Interacts with HSL1 and Participates in the Repression of Seed Maturation Genes inArabidopsisSeedlings

(2013) Yi Zhou et al.   PLANT CELL

bZIP67 Regulates the Omega-3 Fatty Acid Content of Arabidopsis Seed Oil by Activating FATTY ACID DESATURASE3

(2013) A. Mendes et al.   PLANT CELL

The riceGERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism

(2013) Xiaoli Guo et al.   PLANT JOURNAL

Distinct Roles of LAFL Network Genes in Promoting the Embryonic Seedling Fate in the Absence of VAL Repression

(2013) H. Jia et al.   PLANT PHYSIOLOGY

Identification of Direct Targets of FUSCA3, a Key Regulator of Arabidopsis Seed Development

(2013) F. Wang et al.   PLANT PHYSIOLOGY

Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed

(2013) M. F. Belmonte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks

(2013) Haiyan Jia et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

(2012) Gudrun Mönke et al.   NUCLEIC ACIDS RESEARCH

WOX2andSTIMPY-LIKE/WOX8promote cotyledon boundary formation in Arabidopsis

(2012) Catharine Lie et al.   PLANT JOURNAL

Rapid and sensitive hormonal profiling of complex plant samples by liquid chromatography coupled to electrospray ionization tandem mass spectrometry

(2012) Maren Müller et al.   Plant Methods

A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression

(2012) Vijaykumar Veerappan et al.   PLANTA

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Transcriptional Activation of Arabidopsis Axis Patterning Genes WOX8/9 Links Zygote Polarity to Embryo Development

(2011) Minako Ueda et al.   DEVELOPMENTAL CELL

The CW domain, a new histone recognition module in chromatin proteins

(2011) Verena Hoppmann et al.   EMBO JOURNAL

EAR motif-mediated transcriptional repression in plants

(2011) Sateesh Kagale et al.   Epigenetics

Identification of Reference Genes for RT–qPCR Expression Analysis in Arabidopsis and Tomato Seeds

(2011) Bas J. W. Dekkers et al.   PLANT AND CELL PHYSIOLOGY

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

Comprehensive Hormone Profiling in Developing Arabidopsis Seeds: Examination of the Site of ABA Biosynthesis, ABA Transport and Hormone Interactions

(2010) Yuri Kanno et al.   PLANT AND CELL PHYSIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RY/Sph element mediates transcriptional repression of maturation genes from late maturation to early seedling growth

(2009) Gea Guerriero et al.   NEW PHYTOLOGIST

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Differential Expression of WOX Genes Mediates Apical-Basal Axis Formation in the Arabidopsis Embryo

(2008) Holger Breuninger et al.   DEVELOPMENTAL CELL

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Arabidopsis 10-Formyl Tetrahydrofolate Deformylases Are Essential for Photorespiration

(2008) E. Collakova et al.   PLANT CELL

The plant B3 superfamily

(2008) K SWAMINATHAN et al.   TRENDS IN PLANT SCIENCE