Dynamics of Fluorescent Dyes Attached to G-Quadruplex DNA and their Effect on FRET Experiments

Photophysical and Dynamical Properties of Doubly Linked Cy3–DNA Constructs

(2013) Elana M. S. Stennett et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Single molecule FRET data analysis procedures for FRET efficiency determination: Probing the conformations of nucleic acid structures

(2013) Asger Christian Krüger et al.   METHODS

Quantitative visualization of DNA G-quadruplex structures in human cells

(2013) Giulia Biffi et al.   Nature Chemistry

The Structure of Sulfoindocarbocyanine 3 Terminally Attached to dsDNA via a Long, Flexible Tether

(2012) Linas Urnavicius et al.   BIOPHYSICAL JOURNAL

Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

(2012) Miroslav Krepl et al.   Journal of Chemical Theory and Computation

DNA secondary structures: stability and function of G-quadruplex structures

(2012) Matthew L. Bochman et al.   NATURE REVIEWS GENETICS

Cy3-DNA Stacking Interactions Strongly Depend on the Identity of the Terminal Basepair

(2011) Justin Spiriti et al.   BIOPHYSICAL JOURNAL

Orientation of Cyanine Fluorophores Terminally Attached to DNA via Long, Flexible Tethers

(2011) Jonathan Ouellet et al.   BIOPHYSICAL JOURNAL

Accurate Distance Determination of Nucleic Acids via Förster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity

(2011) Simon Sindbert et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Testing the use of molecular dynamics to simulate fluorophore motions and FRET

(2011) Evelyne Deplazes et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Telomerase as an emerging target to fight cancer — Opportunities and challenges for nanomedicine

(2010) C. Philippi et al.   JOURNAL OF CONTROLLED RELEASE

Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: I. Recognizing mixed G-quadruplex in human telomeres

(2009) Qianfan Yang et al.   CHEMICAL COMMUNICATIONS

Single Stranded Loops of Quadruplex DNA As Key Benchmark for Testing Nucleic Acids Force Fields

(2009) Eva Fadrná et al.   Journal of Chemical Theory and Computation

Sequence variant (CTAGGG)n in the human telomere favors a G-quadruplex structure containing a G·C·G·C tetrad

(2009) Kah Wai Lim et al.   NUCLEIC ACIDS RESEARCH

DNA sequence-dependent enhancement of Cy3 fluorescence

(2009) Billie Jo Harvey et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

The Structure of Cyanine 5 Terminally Attached to Double-Stranded DNA: Implications for FRET Studies†

(2008) Asif Iqbal et al.   BIOCHEMISTRY

Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations

(2008) In Suk Joung et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science

(2008) Alessandro Laio et al.   REPORTS ON PROGRESS IN PHYSICS