A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors

Context-specific role of SOX9 in NF-Y mediated gene regulation in colorectal cancer cells

(2015) Zhongcheng Shi et al.   NUCLEIC ACIDS RESEARCH

Zinc Finger Independent Genome-Wide Binding of Sp2 Potentiates Recruitment of Histone-Fold Protein Nf-y Distinguishing It from Sp1 and Sp3

(2015) Sara Völkel et al.   PLoS Genetics

Nuclear Factor-Y is an adipogenic factor that regulates leptin gene expression

(2015) Yi-Hsueh Lu et al.   Molecular Metabolism

A Novel PTEN/Mutant p53/c-Myc/Bcl-XL Axis Mediates Context-Dependent Oncogenic Effects of PTEN with Implications for Cancer Prognosis and Therapy

(2015) Xiaoping Huang et al.   NEOPLASIA

Mutant p53 Drives Pancreatic Cancer Metastasis through Cell-Autonomous PDGF Receptor β Signaling

(2014) Susann Weissmueller et al.   CELL

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

(2014) P. J. Balwierz et al.   GENOME RESEARCH

Histone-Fold Domain Protein NF-Y Promotes Chromatin Accessibility for Cell Type-Specific Master Transcription Factors

(2014) Andrew J. Oldfield et al.   MOLECULAR CELL

Conservation of trans-acting circuitry during mammalian regulatory evolution

(2014) Andrew B. Stergachis et al.   NATURE

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

(2014) Richard I Sherwood et al.   NATURE BIOTECHNOLOGY

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Histone demethylase KDM5B is a key regulator of genome stability

(2014) X. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association of p21 with NF-YA suppresses the expression of Polo-like kinase 1 and prevents mitotic death in response to DNA damage

(2014) Y-C Lin et al.   Cell Death & Disease

NF-Y inactivation causes atypical neurodegeneration characterized by ubiquitin and p62 accumulation and endoplasmic reticulum disorganization

(2014) Tomoyuki Yamanaka et al.   Nature Communications

Lysine-Specific Demethylase 1 Has Dual Functions as a Major Regulator of Androgen Receptor Transcriptional Activity

(2014) Changmeng Cai et al.   Cell Reports

KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation

(2014) Benjamin L Kidder et al.   GENOME BIOLOGY

Sequence-Specific Transcription Factor NF-Y Displays Histone-like DNA Binding and H2B-like Ubiquitination

(2013) Marco Nardini et al.   CELL

Dynamic trans-Acting Factor Colocalization in Human Cells

(2013) Dan Xie et al.   CELL

Targeting the Y/CCAAT box in cancer: YB-1 (YBX1) or NF-Y?

(2013) D Dolfini et al.   CELL DEATH AND DIFFERENTIATION

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

(2013) J. D. Fleming et al.   GENOME RESEARCH

Inferring chromatin-bound protein complexes from genome-wide binding assays

(2013) E. G. Giannopoulou et al.   GENOME RESEARCH

Genome-wide Kinase-Chromatin Interactions Reveal the Regulatory Network of ERK Signaling in Human Embryonic Stem Cells

(2013) Jonathan Göke et al.   MOLECULAR CELL

Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements

(2013) Panagiota Arampatzi et al.   NUCLEIC ACIDS RESEARCH

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

(2013) P. Kheradpour et al.   NUCLEIC ACIDS RESEARCH

PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

(2013) Federico Zambelli et al.   NUCLEIC ACIDS RESEARCH

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

(2013) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

Analysis of the DNA-Binding Profile and Function of TALE Homeoproteins Reveals Their Specialization and Specific Interactions with Hox Genes/Proteins

(2013) Dmitry Penkov et al.   Cell Reports

Decoding a Signature-Based Model of Transcription Cofactor Recruitment Dictated by Cardinal Cis-Regulatory Elements in Proximal Promoter Regions

(2013) Christopher Benner et al.   PLoS Genetics

Interaction of C/EBP-beta and NF-Y factors constrains activity levels of the nutritionally controlled promoter IA expressing the acetyl-CoA carboxylase-alpha gene in cattle

(2012) Xuanming Shi et al.   BMC MOLECULAR BIOLOGY

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

(2012) J. Wang et al.   GENOME RESEARCH

The Forkhead Transcription Factor FOXM1 Controls Cell Cycle-Dependent Gene Expression through an Atypical Chromatin Binding Mechanism

(2012) X. Chen et al.   MOLECULAR AND CELLULAR BIOLOGY

Phosphorylation of ATF2 and interaction with NFY induces c-Jun in the gonadotrope

(2012) Lacey L. Lindaman et al.   MOLECULAR AND CELLULAR ENDOCRINOLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

Genome-wide localization and expression profiling establish Sp2 as a sequence-specific transcription factor regulating vitally important genes

(2012) Gloria Terrados et al.   NUCLEIC ACIDS RESEARCH

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

(2012) J. Wang et al.   NUCLEIC ACIDS RESEARCH

Multiple Histone Methyl and Acetyltransferase Complex Components Bind the HLA-DRA Gene

(2012) Nancy M. Choi et al.   PLoS One

The Short Isoform of NF-YA Belongs to the Embryonic Stem Cell Transcription Factor Circuitry

(2012) Diletta Dolfini et al.   STEM CELLS

DNA Minor Groove Sensing and Widening by the CCAAT-Binding Complex

(2012) Eva M. Huber et al.   STRUCTURE

Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors

(2011) Peter C. Hollenhorst et al.   Annual Review of Biochemistry

NF-Y is necessary for hematopoietic stem cell proliferation and survival

(2011) G. Bungartz et al.   BLOOD

A perspective of promoter architecture from the CCAAT box

(2011) Diletta Dolfini et al.   CELL CYCLE

NF-Y and the transcriptional activation of CCAAT promoters

(2011) Diletta Dolfini et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters

(2011) Adalberto Costessi et al.   EMBO JOURNAL

Genome wide study of NF-Y type CCAAT boxes in unidirectional and bidirectional promoters in human and mouse

(2011) Antti Häkkinen et al.   JOURNAL OF THEORETICAL BIOLOGY

A chromatin-modifying function of JNK during stem cell differentiation

(2011) Vijay K Tiwari et al.   NATURE GENETICS

Specific inhibition of NF-Y subunits triggers different cell proliferation defects

(2011) Paolo Benatti et al.   NUCLEIC ACIDS RESEARCH

Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis

(2011) Bum-Kyu Lee et al.   NUCLEIC ACIDS RESEARCH

NF-Y Recruits Ash2L to Impart H3K4 Trimethylation on CCAAT Promoters

(2011) Andrea Fossati et al.   PLoS One

Systems Analysis of ATF3 in Stress Response and Cancer Reveals Opposing Effects on Pro-Apoptotic Genes in p53 Pathway

(2011) Yujiro Tanaka et al.   PLoS One

Inactivation of CBF/NF-Y in postnatal liver causes hepatocellular degeneration, lipid deposition and endoplasmic reticulum stress

(2011) Rong Luo et al.   Scientific Reports

Six family genes control the proliferation and differentiation of muscle satellite cells

(2010) Hiroshi Yajima et al.   EXPERIMENTAL CELL RESEARCH

NF-Y and USF1 transcription factor binding to CCAAT-box and E-box elements activates the CP27 promoter

(2010) Yoshihiro Ito et al.   GENE

A human MAP kinase interactome

(2010) Sourav Bandyopadhyay et al.   NATURE METHODS

The central role of CDE/CHR promoter elements in the regulation of cell cycle-dependent gene transcription

(2009) Gerd A. Müller et al.   FEBS Journal

Revealing Global Regulatory Perturbations across Human Cancers

(2009) Hani Goodarzi et al.   MOLECULAR CELL

Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships

(2009) Ken Daigoro Yokoyama et al.   NUCLEIC ACIDS RESEARCH

Tandem ChoRE and CCAAT Motifs and Associated Factors Regulate Txnip Expression in Response to Glucose or Adenosine-Containing Molecules

(2009) Fa-Xing Yu et al.   PLoS One

Role of Nrf1 in antioxidant response element-mediated gene expression and beyond

(2009) Madhurima Biswas et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Systematic functional characterization of cis-regulatory motifs in human core promoters

(2008) S. Sinha et al.   GENOME RESEARCH

CBF/NF-Y controls endoplasmic reticulum stress induced transcription through recruitment of both ATF6(N) and TBP

(2008) Rong Luo et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Quantitative Proteomic Identification of MAZ as a Transcriptional Regulator of Muscle-Specific Genes in Skeletal and Cardiac Myocytes

(2008) C. L. Himeda et al.   MOLECULAR AND CELLULAR BIOLOGY

The Histone-Like NF-Y Is a Bifunctional Transcription Factor

(2008) M. Ceribelli et al.   MOLECULAR AND CELLULAR BIOLOGY