Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity

H19controls reactivation of the imprinted gene network during muscle regeneration

(2016) Clémence Martinet et al.   DEVELOPMENT

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

H19 activates Wnt signaling and promotes osteoblast differentiation by functioning as a competing endogenous RNA

(2016) Wei-Cheng Liang et al.   Scientific Reports

Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells

(2015) Allon M. Klein et al.   CELL

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding

(2015) Shashank Tripathi et al.   Cell Host & Microbe

Nuclear Size Scaling during Xenopus Early Development Contributes to Midblastula Transition Timing

(2015) Predrag Jevtić et al.   CURRENT BIOLOGY

Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories

(2015) Maïwen Caudron-Herger et al.   NUCLEIC ACIDS RESEARCH

Noncoding RNAs, Emerging Regulators of Skeletal Muscle Development and Diseases

(2015) Mao Nie et al.   Biomed Research International

SNES: single nucleus exome sequencing

(2015) Marco L Leung et al.   GENOME BIOLOGY

Macropinocytosis in phagocytes: regulation of MHC class-II-restricted antigen presentation in dendritic cells

(2015) Zhenzhen Liu et al.   Frontiers in Physiology

Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data

(2014) Kunshan Zhang et al.   BMC GENOMICS

Gene Regulatory Networks and Transcriptional Mechanisms that Control Myogenesis

(2014) Margaret Buckingham et al.   DEVELOPMENTAL CELL

The H19 long noncoding RNA gives rise to microRNAs miR-675-3p and miR-675-5p to promote skeletal muscle differentiation and regeneration

(2014) B. K. Dey et al.   GENES & DEVELOPMENT

Bias towards large genes in autism

(2014) Shahar Shohat et al.   NATURE

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

(2014) Barbara Treutlein et al.   NATURE

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

(2014) Alex K. Shalek et al.   NATURE

Irresistible force meets immoveable object

(2014)   NATURE BIOTECHNOLOGY

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes

(2014) Sebastiaan van Heesch et al.   GENOME BIOLOGY

Role of β-hydroxybutyrate, its polymer poly-β-hydroxybutyrate and inorganic polyphosphate in mammalian health and disease

(2014) Elena N. Dedkova et al.   Frontiers in Physiology

Long noncoding RNAs, emerging players in muscle differentiation and disease

(2014) Maria Neguembor et al.   Skeletal Muscle

Myostatin-induced inhibition of the long noncoding RNA Malat1 is associated with decreased myogenesis

(2013) Rani Watts et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Circadian Rhythms, Skeletal Muscle Molecular Clocks, and Exercise

(2013) Elizabeth A. Schroder et al.   EXERCISE AND SPORT SCIENCES REVIEWS

Dial M(RF) for myogenesis

(2013) Natalia Moncaut et al.   FEBS Journal

Maternal imprinting at the H19–Igf2 locus maintains adult haematopoietic stem cell quiescence

(2013) Aparna Venkatraman et al.   NATURE

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

An Intragenic SRF-Dependent Regulatory Motif Directs Cardiac-Specific microRNA-1-1/133a-2 Expression

(2013) Qi Li et al.   PLoS One

RNA-sequencing from single nuclei

(2013) R. V. Grindberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

H19 lncRNA controls gene expression of the Imprinted Gene Network by recruiting MBD1

(2013) P. Monnier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

(2013) A. A. Sigova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

mTOR Signaling in Growth Control and Disease

(2012) Mathieu Laplante et al.   CELL

Pax3/7BP Is a Pax7- and Pax3-Binding Protein that Regulates the Proliferation of Muscle Precursor Cells by an Epigenetic Mechanism

(2012) Yarui Diao et al.   Cell Stem Cell

Genome-wide identification of enhancers in skeletal muscle: the role of MyoD1

(2012) R. Blum et al.   GENES & DEVELOPMENT

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

The General Transcription Factor TAF7 Is Essential for Embryonic Development but Not Essential for the Survival or Differentiation of Mature T Cells

(2012) A. Gegonne et al.   MOLECULAR AND CELLULAR BIOLOGY

The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r

(2012) Andrew Keniry et al.   NATURE CELL BIOLOGY

Building Muscle: Molecular Regulation of Myogenesis

(2012) C. F. Bentzinger et al.   Cold Spring Harbor Perspectives in Biology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

CDK4 and cyclin D1 allow human myogenic cells to recapture growth property without compromising differentiation potential

(2011) K Shiomi et al.   GENE THERAPY

miR-155 Inhibits Expression of the MEF2A Protein to Repress Skeletal Muscle Differentiation

(2011) Hee Young Seok et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IGF-II is regulated by microRNA-125b in skeletal myogenesis

(2011) Yejing Ge et al.   JOURNAL OF CELL BIOLOGY

p53 regulates epithelial–mesenchymal transition and stem cell properties through modulating miRNAs

(2011) Chun-Ju Chang et al.   NATURE CELL BIOLOGY

Genome-wide remodeling of the epigenetic landscape during myogenic differentiation

(2011) P. Asp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Validation of Skeletal Muscle cis-Regulatory Module Predictions Reveals Nucleotide Composition Bias in Functional Enhancers

(2011) Andrew T. Kwon et al.   PLoS Computational Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Genome-wide MyoD Binding in Skeletal Muscle Cells: A Potential for Broad Cellular Reprogramming

(2010) Yi Cao et al.   DEVELOPMENTAL CELL

MiR-322/424 and -503 Are Induced during Muscle Differentiation and Promote Cell Cycle Quiescence and Differentiation by Down-Regulation of Cdc25A

(2010) Sukumar Sarkar et al.   MOLECULAR BIOLOGY OF THE CELL

Genome-wide Identification of Polycomb-Associated RNAs by RIP-seq

(2010) Jing Zhao et al.   MOLECULAR CELL

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

MicroRNA control of muscle development and disease

(2009) Andrew H Williams et al.   CURRENT OPINION IN CELL BIOLOGY

p53 regulates the proliferation, differentiation and spontaneous transformation of mesenchymal stem cells

(2009) Alejandro Armesilla-Diaz et al.   EXPERIMENTAL CELL RESEARCH

MicroRNAs 1, 133, and 206: Critical factors of skeletal and cardiac muscle development, function, and disease

(2009) W.H. Davin Townley-Tilson et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Microrna-221 and Microrna-222 Modulate Differentiation and Maturation of Skeletal Muscle Cells

(2009) Beatrice Cardinali et al.   PLoS One

Validation of internal control for gene expression study in soybean by quantitative real-time PCR

(2008) Bo Jian et al.   BMC MOLECULAR BIOLOGY

Specific requirements of MRFs for the expression of muscle specific microRNAs, miR-1, miR-206 and miR-133

(2008) Dylan Sweetman et al.   DEVELOPMENTAL BIOLOGY

MEN  /  nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

(2008) H. Sunwoo et al.   GENOME RESEARCH

IKK/NF-κB regulates skeletal myogenesis via a signaling switch to inhibit differentiation and promote mitochondrial biogenesis

(2008) Nadine Bakkar et al.   JOURNAL OF CELL BIOLOGY

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY

The genetics of vertebrate myogenesis

(2008) Robert J. Bryson-Richardson et al.   NATURE REVIEWS GENETICS