A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation

PathwAX: a web server for network crosstalk based pathway annotation

(2016) Christoph Ogris et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Uncovering disease-disease relationships through the incomplete interactome

(2015) J. Menche et al.   SCIENCE

Systematic Analysis of Endometrial Cancer-Associated Hub Proteins Based on Text Mining

(2015) Huiqiao Gao et al.   Biomed Research International

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Aberrant expression of microRNAs in bladder cancer

(2013) Hirofumi Yoshino et al.   Nature Reviews Urology

GeneMANIA Prediction Server 2013 Update

(2013) Khalid Zuberi et al.   NUCLEIC ACIDS RESEARCH

FunCoup 3.0: database of genome-wide functional coupling networks

(2013) Thomas Schmitt et al.   NUCLEIC ACIDS RESEARCH

Statistical Assessment of Crosstalk Enrichment between Gene Groups in Biological Networks

(2013) Theodore McCormack et al.   PLoS One

EnrichNet: network-based gene set enrichment analysis

(2012) Enrico Glaab et al.   BIOINFORMATICS

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks

(2012) Andrey Alexeyenko et al.   BMC BIOINFORMATICS

Targeting the MAPK–RAS–RAF signaling pathway in cancer therapy

(2012) Libero Santarpia et al.   EXPERT OPINION ON THERAPEUTIC TARGETS

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Genetic Reactivation of Cone Photoreceptors Restores Visual Responses in Retinitis Pigmentosa

(2010) V. Busskamp et al.   SCIENCE

ErbB receptors and signaling pathways in cancer

(2009) Nancy E Hynes et al.   CURRENT OPINION IN CELL BIOLOGY

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Extracellular Matrix Molecules: Potential Targets in Pharmacotherapy

(2009) H. Jarvelainen et al.   PHARMACOLOGICAL REVIEWS

GABA’s Control of Stem and Cancer Cell Proliferation in Adult Neural and Peripheral Niches

(2009) Stephanie Z. Young et al.   PHYSIOLOGY

Hyaluronan-Mediated Leukocyte Adhesion and Dextran Sulfate Sodium-Induced Colitis Are Attenuated in the Absence of Signal Transducer and Activator of Transcription 1

(2008) Sudip K. Bandyopadhyay et al.   AMERICAN JOURNAL OF PATHOLOGY

Roles of estrogen receptor   and   in modulating urothelial cell proliferation

(2008) J. Teng et al.   ENDOCRINE-RELATED CANCER

Inhibition of mTORC1 leads to MAPK pathway activation through a PI3K-dependent feedback loop in human cancer

(2008) Arkaitz Carracedo et al.   JOURNAL OF CLINICAL INVESTIGATION

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH