Fungi and bacteria in the rhizosphere of Cryptomeria japonica exhibited different community assembly patterns at regional scales in East Asia

Amplicon sequencing reveals the arbuscular mycorrhizal fungal community composition in Cryptomeria japonica at one local site

(2022) Akotchiffor Kevin Geoffroy Djotan et al.   Journal of Forest Research

Slope-induced factors shape bacterial communities in surface soils in a forested headwater catchment

(2022) Nobuhiko Shigyo et al.   CATENA

Effects of climatic and edaphic conditions on structuring patterns of soil nematode communities in Japanese cedar (Cryptomeria japonica) plantations

(2022) Yudai Kitagami et al.   FOREST ECOLOGY AND MANAGEMENT

Community of soil-inhabiting myxomycetes shares similar assembly mechanisms with fungi, and is affected by bacterial community in subtropical forests of China

(2022) Yang Gao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Assembly of rhizosphere microbial communities in Artemisia annua: recruitment of plant growth‐promoting microorganisms and inter‐kingdom interactions between bacteria and fungi

(2021) Yuhua Shi et al.   PLANT AND SOIL

Depression of the soil arbuscular mycorrhizal fungal community by the canopy gaps in a Japanese cedar (Cryptomeria japonica) plantation on Lushan Mountain, subtropical China

(2021) Guiwu Zou et al.   PeerJ

Colonization status and community structure of arbuscular mycorrhizal fungi in the coniferous tree, Cryptomeria japonica, with special reference to root orders

(2021) Yosuke Matsuda et al.   PLANT AND SOIL

Soil Bacterial Community Composition in Cryptomeria japonica Plantation at Different Times after Clear-Cutting

(2021) Yukiko Abe et al.   Forests

Towards revealing the global diversity and community assembly of soil eukaryotes

(2021) Farzad Aslani et al.   ECOLOGY LETTERS

Cautionary notes on the use of co-occurrence networks in soil ecology

(2021) Marta Goberna et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of the last glacial period on genetic diversity and genetic differentiation in Cryptomeria japonica in East Asia

(2020) Yoshihiko Tsumura et al.   Tree Genetics & Genomes

Towards Unraveling Macroecological Patterns in Rhizosphere Microbiomes

(2020) Caroline Brunel et al.   TRENDS IN PLANT SCIENCE

Rare fungus, Mortierella capitata, promotes crop growth by stimulating primary metabolisms related genes and reshaping rhizosphere bacterial community

(2020) Fang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organism body size structures the soil microbial and nematode community assembly at a continental and global scale

(2020) Lu Luan et al.   Nature Communications

Mortierella Species as the Plant Growth-Promoting Fungi Present in the Agricultural Soils

(2020) Ewa Ozimek et al.   Agriculture-Basel

Changes in rhizosphere bacterial and fungal community composition with vegetation restoration in planted forests

(2019) Gui-yao Liu et al.   LAND DEGRADATION & DEVELOPMENT

Use of Rhizobacteria and Mycorrhizae Consortium in the Open Field as a Strategy for Improving Crop Nutrition, Productivity and Soil Fertility

(2019) Anas Raklami et al.   Frontiers in Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Deciphering Microbiome Related to Rusty Roots of Panax ginseng and Evaluation of Antagonists Against Pathogenic Ilyonectria

(2019) Defei Liu et al.   Frontiers in Microbiology

Incorporating phylogenetic metrics to microbial co‐occurrence networks based on amplicon sequences to discern community assembly processes

(2019) Marta Goberna et al.   Molecular Ecology Resources

Biogeography and the driving factors affecting forest soil bacteria in an arid area

(2019) Quanchao Zeng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effects of bacterial strains isolated from the ectomycorrhizal roots of Laccaria parva on sporocarp production by the fungus in vitro

(2019) Keisuke Obase   MYCOSCIENCE

Climatic factors have unexpectedly strong impacts on soil bacterial β-diversity in 12 forest ecosystems

(2019) Yong Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impacts of environmental factors on the whole microbial communities in the rhizosphere of a metal-tolerant plant: Elsholtzia haichowensis Sun

(2018) Songqiang Deng et al.   ENVIRONMENTAL POLLUTION

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

Induced Salt Tolerance of Perennial Ryegrass by a Novel Bacterium Strain from the Rhizosphere of a Desert Shrub Haloxylon ammodendron

(2018) Ao-Lei He et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Regulation of antibiotic production in Actinobacteria: new perspectives from the post-genomic era

(2018) Helga U. van der Heul et al.   NATURAL PRODUCT REPORTS

Biogeography and ecological processes affecting root-associated bacterial communities in soybean fields across China

(2018) Baogang Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale

(2018) Baogang Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeography of soil bacteria and archaea across France

(2018) Battle Karimi et al.   Science Advances

Biotic interactions in species distribution modelling: 10 questions to guide interpretation and avoid false conclusions

(2018) Carsten F. Dormann et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment

(2018) Marc W. Schmid et al.   MOLECULAR ECOLOGY

Extending the hyphal area of the ectomycorrhizal fungus Laccaria parva co-cultured with ectomycorrhizosphere bacteria on nutrient agar plate

(2018) Keisuke Obase   MYCOSCIENCE

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Change in soil bacterial community during secondary succession depend on plant and soil characteristics

(2018) F.Z. Zhao et al.   CATENA

Precipitation drives the biogeographic distribution of soil fungal community in Inner Mongolian temperate grasslands

(2017) Di Wang et al.   JOURNAL OF SOILS AND SEDIMENTS

Verrucomicrobial elevational distribution was strongly influenced by soil pH and carbon/nitrogen ratio

(2017) Congcong Shen et al.   JOURNAL OF SOILS AND SEDIMENTS

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

(2017) Sigrid Dassen et al.   MOLECULAR ECOLOGY

Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils

(2016) Zongwei Xia et al.   Frontiers in Microbiology

The Ecology of Acidobacteria: Moving beyond Genes and Genomes

(2016) Anna M. Kielak et al.   Frontiers in Microbiology

Rhizosphere processes are quantitatively important components of terrestrial carbon and nutrient cycles

(2015) Adrien C. Finzi et al.   GLOBAL CHANGE BIOLOGY

A framework for evaluating the influence of climate, dispersal limitation, and biotic interactions using fossil pollen associations across the late Quaternary

(2014) Jessica L. Blois et al.   ECOGRAPHY

Acidification processes in soils with different acid buffering capacity in Cryptomeria japonica and Chamaecyparis obtusa forests over two decades

(2014) Toko Tanikawa et al.   FOREST ECOLOGY AND MANAGEMENT

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY