Integrated mRNA and small RNA sequencing reveals post-transcriptional regulation of the sesquiterpene pathway in Santalum album L. (Indian sandalwood)

The MdmiR156n Regulates Drought Tolerance and Flavonoid Synthesis in Apple Calli and Arabidopsis

(2023) Guo Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Chromosome-level genome assemblies from two sandalwood species provide insights into the evolution of the Santalales

(2023) Zhou Hong et al.   Communications Biology

MicroRNA-Mediated Gene Regulation of Secondary Metabolism in Plants

(2022) Shan Jiang et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Comprehensive Identification and Profiling of miRNAs Involved in Terpenoid Synthesis of Gleditsia sinensis Lam.

(2022) Yuzhang Yang et al.   Forests

Rationally engineering santalene synthase to readjust the component ratio of sandalwood oil

(2022) Wenlong Zha et al.   Nature Communications

Biosynthesis of Secondary Metabolites Based on the Regulation of MicroRNAs

(2022) Rajib Hossain et al.   Biomed Research International

Integrated mRNA and miRNA Transcriptome Analysis Suggests a Regulatory Network for UV–B-Controlled Terpenoid Synthesis in Fragrant Woodfern (Dryopteris fragrans)

(2022) Chunhua Song et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Identification and function of miRNA-mRNA interaction pairs during lateral root development of hemi-parasitic Santalum album L. seedlings

(2022) Yuan Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Cloning, characterization, and functional analysis of acetyl-CoA C-acetyltransferase and 3-hydroxy-3-methylglutaryl-CoA synthase genes in Santalum album

(2021) Meiyun Niu et al.   Scientific Reports

Distinct Evolutionary Profiles and Functions of microRNA156 and microRNA529 in Land Plants

(2021) Qi Xie et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Metabolic Engineering of Escherichia coli for Production of α-Santalene, a Precursor of Sandalwood Oil

(2021) Yan Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

MiR156 regulates anthocyanin biosynthesis through SPL targets and other microRNAs in poplar

(2020) Yamei Wang et al.   Horticulture Research

Transcriptomic Analysis and Specific Expression of Transcription Factor Genes in the Root and Sporophyll of Dryopteris fragrans (L.) Schott

(2020) Lingling Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterizing the Role of the miR156-SPL Network in Plant Development and Stress Response

(2020) John Martin Jerome Jeyakumar et al.   Plants-Basel

Functional characterization of an Indian sandalwood (Santalum album L.) dual-localized bifunctional nerolidol/linalool synthase gene involved in stress response

(2020) Xinhua Zhang et al.   PHYTOCHEMISTRY

Draft genome of Santalum album L. provides genomic resources for accelerated trait improvement

(2019) Modhumita Ghosh Dasgupta et al.   Tree Genetics & Genomes

Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum

(2019) Abdul Fatah A. Samad et al.   BMC GENOMICS

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Multi-Omics Driven Assembly and Annotation of the Sandalwood (Santalum album) Genome

(2018) Hirehally Basavarajegowda Mahesh et al.   PLANT PHYSIOLOGY

Selection and Validation of Novel RT-qPCR Reference Genes under Hormonal Stimuli and in Different Tissues of Santalum album

(2018) Haifeng Yan et al.   Scientific Reports

Contemporary Understanding of miRNA-Based Regulation of Secondary Metabolites Biosynthesis in Plants

(2017) Om P. Gupta et al.   Frontiers in Plant Science

MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network

(2017) Abdul F. A. Samad et al.   Frontiers in Plant Science

Functional and evolutionary analyses of the miR156 and miR529 families in land plants

(2016) Edna Gicela Ortiz Morea et al.   BMC PLANT BIOLOGY

Transcriptome-wide identification of Rauvolfia serpentina microRNAs and prediction of their potential targets

(2016) Pravin Prakash et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification of miRNAs and their targets involved in the secondary metabolic pathways of Mentha spp.

(2016) Noopur Singh et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification and analysis of miRNAs and their targets in ginger using bioinformatics approach

(2016) Noopur Singh et al.   GENE

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Progressive Regulation of Sesquiterpene Biosynthesis in Arabidopsis and Patchouli (Pogostemon cablin) by the miR156-Targeted SPL Transcription Factors

(2015) Zong-Xia Yu et al.   Molecular Plant

In silico analysis and expression profiling of miRNAs targeting genes of steviol glycosides biosynthetic pathway and their relationship with steviol glycosides content in different tissues of Stevia rebaudiana

(2015) Monica Saifi et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Mining NGS transcriptomes for miRNAs and dissecting their role in regulating growth, development, and secondary metabolites production in different organs of a medicinal herb, Picrorhiza kurroa

(2015) Ira Vashisht et al.   PLANTA

Differential microRNA Analysis of Glandular Trichomes and Young Leaves in Xanthium strumarium L. Reveals Their Putative Roles in Regulating Terpenoid Biosynthesis

(2015) Rongyan Fan et al.   PLoS One

Functional Characterization of Novel Sesquiterpene Synthases from Indian Sandalwood, Santalum album

(2015) Prabhakar Lal Srivastava et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Transcriptional regulation of secondary metabolite biosynthesis in plants

(2013) Barunava Patra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Molecular regulation of santalol biosynthesis in Santalum album L.

(2013) Arti Rani et al.   GENE

Evaluation of in vivo anti-hyperglycemic and antioxidant potentials of α-santalol and sandalwood oil

(2013) Biswapriya B. Misra et al.   PHYTOMEDICINE

Biosynthesis of Sandalwood Oil: Santalum album CYP76F Cytochromes P450 Produce Santalols and Bergamotol

(2013) Maria L. Diaz-Chavez et al.   PLoS One

Functional Evolution in the Plant SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Family

(2013) Jill C. Preston et al.   Frontiers in Plant Science

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

(2013) Michiel Van Bel et al.   GENOME BIOLOGY

Preparative separation of α- and β-santalenes and (Z)-α- and (Z)-β-santalols using silver nitrate-impregnated silica gel medium pressure liquid chromatography and analysis of sandalwood oil

(2012) Pankaj P. Daramwar et al.   ANALYST

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Transcriptional Regulation of Plant Secondary MetabolismF

(2012) Chang-Qing Yang et al.   Journal of Integrative Plant Biology

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Sandalwood Fragrance Biosynthesis Involves Sesquiterpene Synthases of Both the Terpene Synthase (TPS)-a and TPS-b Subfamilies, including Santalene Synthases

(2011) Christopher G. Jones et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

Phytochemistry of the heartwood from fragrant Santalum species: a review

(2010) Nicolas Baldovini et al.   FLAVOUR AND FRAGRANCE JOURNAL

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Isolation of cDNAs and functional characterisation of two multi-product terpene synthase enzymes from sandalwood, Santalum album L.

(2008) Christopher G. Jones et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS