NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data

NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use

(2023) Satya S. Sahoo et al.   Frontiers in Neuroinformatics

Mapping cortical and subcortical asymmetries in substance dependence: Findings from the ENIGMA Addiction Working Group

(2021) Zhipeng Cao et al.   ADDICTION BIOLOGY

NeuroQuery, comprehensive meta-analysis of human brain mapping

(2020) Jérôme Dockès et al.   eLife

A Survey on Deep Learning for Named Entity Recognition

(2020) Jing Li et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging

(2019) David N. Kennedy et al.   Frontiers in Neuroinformatics

PMC text mining subset in BioC: about three million full-text articles and growing

(2019) Donald C Comeau et al.   BIOINFORMATICS

The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services

(2019) Paolo Avesani et al.   Scientific Data

Amygdala volume and social anxiety symptom severity: Does segmentation technique matter?

(2019) Reema Jayakar et al.   PSYCHIATRY RESEARCH-NEUROIMAGING

Resting-State Connectivity Biomarkers of Cognitive Performance and Social Function in Individuals With Schizophrenia Spectrum Disorder and Healthy Control Subjects

(2018) Joseph D. Viviano et al.   BIOLOGICAL PSYCHIATRY

SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research*

(2018) Honghan Wu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Functional connectivity in distinct cognitive subtypes in psychosis

(2018) Kathryn E. Lewandowski et al.   SCHIZOPHRENIA RESEARCH

Thalia: semantic search engine for biomedical abstracts

(2018) Axel J Soto et al.   BIOINFORMATICS

ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata

(2018) Satya S. Sahoo et al.   INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS

MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank

(2017) Yuqing Mao et al.   Journal of Biomedical Semantics

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

(2016) Karla L Miller et al.   NATURE NEUROSCIENCE

ConnectomeDB—Sharing human brain connectivity data

(2016) Michael R. Hodge et al.   NEUROIMAGE

SchizConnect: Mediating neuroimaging databases on schizophrenia and related disorders for large-scale integration

(2016) Lei Wang et al.   NEUROIMAGE

Sharing the wealth: Neuroimaging data repositories

(2016) Simon Eickhoff et al.   NEUROIMAGE

Sharing brain mapping statistical results with the neuroimaging data model

(2016) Camille Maumet et al.   Scientific Data

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments

(2016) Krzysztof J. Gorgolewski et al.   Scientific Data

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Entity Linking with a Knowledge Base: Issues, Techniques, and Solutions

(2015) Wei Shen et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

The Three NITRCs: A Guide to Neuroimaging Neuroinformatics Resources

(2015) David N. Kennedy et al.   NEUROINFORMATICS

Big data from small data: data-sharing in the 'long tail' of neuroscience

(2014) Adam R Ferguson et al.   NATURE NEUROSCIENCE

Statistical algorithms for ontology-based annotation of scientific literature

(2014) Chayan Chakrabarti et al.   Journal of Biomedical Semantics

The Ontology of Clinical Research (OCRe): An informatics foundation for the science of clinical research

(2013) Ida Sim et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Towards structured sharing of raw and derived neuroimaging data across existing resources

(2013) D.B. Keator et al.   NEUROIMAGE

If We Share Data, Will Anyone Use Them? Data Sharing and Reuse in the Long Tail of Science and Technology

(2013) Jillian C. Wallis et al.   PLoS One

Automated annotation of functional imaging experiments via multi-label classification

(2013) Matthew D. Turner et al.   Frontiers in Neuroscience

The Cognitive Paradigm Ontology: Design and Application

(2011) Jessica A. Turner et al.   NEUROINFORMATICS

A practical method for transforming free-text eligibility criteria into computable criteria

(2010) Samson W. Tu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Open Access Series of Imaging Studies: Longitudinal MRI Data in Nondemented and Demented Older Adults

(2009) Daniel S. Marcus et al.   JOURNAL OF COGNITIVE NEUROSCIENCE

Special Issue: The First Provenance Challenge

(2007) Luc Moreau et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE