Infection and tissue distribution of highly pathogenic avian influenza A type H5N1 (clade 2.3.4.4b) in red fox kits ( Vulpes vulpes )

Potential cross-species transmission of highly pathogenic avian influenza H5 subtype (HPAI H5) viruses to humans calls for the development of H5-specific and universal influenza vaccines

(2023) Pan Huang et al.   Cell Discovery

An Evaluation of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology

(2023) Hon S. Ip et al.   Microorganisms

A new clade 2.3.4.4b H5N1 highly pathogenic avian influenza genotype detected in Europe in 2021

(2022) Alexander Nagy et al.   ARCHIVES OF VIROLOGY

Global dissemination of H5N1 influenza viruses bearing the clade 2.3.4.4b HA gene and biologic analysis of the ones detected in China

(2022) Pengfei Cui et al.   Emerging Microbes & Infections

Virological, pathological, and glycovirological investigations of an Ezo red fox and a tanuki naturally infected with H5N1 high pathogenicity avian influenza viruses in Hokkaido, Japan

(2022) Takahiro Hiono et al.   VIROLOGY

Alarming situation of emerging H5 and H7 avian influenza and effective control strategies

(2022) Jianzhong Shi et al.   Emerging Microbes & Infections

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Whole-Genome Analysis Surveillance of Influenza A Virus Resistance to Polymerase Complex Inhibitors in Eastern Spain from 2016 to 2019

(2021) Beatriz Mengual-Chuliá et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

New strategies to improve minimap2 alignment accuracy

(2021) Heng Li   BIOINFORMATICS

Antigenic Drift of Hemagglutinin and Neuraminidase in seasonal H1N1 influenza Viruses from Saudi Arabia in 2014‐2015

(2020) Asif Naeem et al.   JOURNAL OF MEDICAL VIROLOGY

Method comparison of targeted influenza A virus typing and whole-genome sequencing from respiratory specimens of companion animals

(2020) Patrick K. Mitchell et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Loss of fitness in mallards of Mexican H7N3 highly pathogenic avian influenza virus after circulating in chickens

(2019) Sung-Su Youk et al.   JOURNAL OF VIROLOGY

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses

(2017) Bin Zhou et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

(2016) Zeeshan Khaliq et al.   BMC GENOMICS

Influenza Research Database: An integrated bioinformatics resource for influenza virus research

(2016) Yun Zhang et al.   NUCLEIC ACIDS RESEARCH

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Glycine at Position 622 in PB1 Contributes to the Virulence of H5N1 Avian Influenza Virus in Mice

(2015) Xiaoxiao Feng et al.   JOURNAL OF VIROLOGY

A Single Amino Acid Substitution in the Novel H7N9 Influenza A Virus NS1 Protein Increases CPSF30 Binding and Virulence

(2014) J. Ayllon et al.   JOURNAL OF VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pathogenesis of influenza virus infections: the good, the bad and the ugly

(2012) T Kuiken et al.   Current Opinion in Virology

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Design and Performance of the CDC Real-Time Reverse Transcriptase PCR Swine Flu Panel for Detection of 2009 A (H1N1) Pandemic Influenza Virus

(2011) Bo Shu et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Acquisition of Human-Type Receptor Binding Specificity by New H5N1 Influenza Virus Sublineages during Their Emergence in Birds in Egypt

(2011) Yohei Watanabe et al.   PLoS Pathogens

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis

(2008) Olivo Miotto et al.   BMC BIOINFORMATICS

A new influenza virus virulence determinant: The NS1 protein four C-terminal residues modulate pathogenicity

(2008) D. Jackson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two amino acid residues in the matrix protein M1 contribute to the virulence difference of H5N1 avian influenza viruses in mice

(2008) Shufang Fan et al.   VIROLOGY