Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition

DIANA-miTED: a microRNA tissue expression database

(2021) Ioannis Kavakiotis et al.   NUCLEIC ACIDS RESEARCH

The expression and function of miR-622 in a variety of tumors

(2021) Juan Lu et al.   BIOMEDICINE & PHARMACOTHERAPY

Retroposed copies of RET gene: a somatically acquired event in medullary thyroid carcinoma

(2019) Larissa V. Bim et al.   BMC Medical Genomics

MiR-492 regulates metastatic properties of hepatoblastoma via CD44

(2018) Julia von Frowein et al.   LIVER INTERNATIONAL

The competing endogenous circular RNA ADAMTS14 suppressed hepatocellular carcinoma progression through regulating microRNA-572/regulator of calcineurin 1

(2018) Changlong Song et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

(2018) Marina Lizio et al.   NUCLEIC ACIDS RESEARCH

The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?

(2017) Claudio Casola et al.   Genome Biology and Evolution

An integrated expression atlas of miRNAs and their promoters in human and mouse

(2017) Derek de Rie et al.   NATURE BIOTECHNOLOGY

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

(2017) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes

(2017) Ludwig C. Hinske et al.   Database-The Journal of Biological Databases and Curation

Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs

(2017) Gustavo S. França et al.   Frontiers in Genetics

Prognostic value of 5-microRNA based signature in T2-T3N0 colon cancer

(2016) Maciej Bobowicz et al.   CLINICAL & EXPERIMENTAL METASTASIS

The life history of retrocopies illuminates the evolution of new mammalian genes

(2016) Francesco Nicola Carelli et al.   GENOME RESEARCH

Host gene constraints and genomic context impact the expression and evolution of human microRNAs

(2016) Gustavo S. França et al.   Nature Communications

A Genome-Wide Landscape of Retrocopies in Primate Genomes

(2015) Fábio C.P. Navarro et al.   Genome Biology and Evolution

Large-scale profiling of microRNAs for The Cancer Genome Atlas

(2015) Andy Chu et al.   NUCLEIC ACIDS RESEARCH

Protective role of miR-155 in breast cancer through RAD51 targeting impairs homologous recombination after irradiation

(2014) P. Gasparini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miRIAD—integrating microRNA inter- and intragenic data

(2014) Ludwig Christian Hinske et al.   Database-The Journal of Biological Databases and Curation

RCPedia: a database of retrocopied genes

(2013) Fábio C. P. Navarro et al.   BIOINFORMATICS

Alternative Splicing Regulates Biogenesis of miRNAs Located across Exon-Intron Junctions

(2013) Ze’ev Melamed et al.   MOLECULAR CELL

‘See-saw’ expression of microRNA-198 and FSTL1 from a single transcript in wound healing

(2013) Gopinath M. Sundaram et al.   NATURE

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

microRNA complements in deuterostomes: origin and evolution of microRNAs

(2011) Florent Campo-Paysaa et al.   EVOLUTION & DEVELOPMENT

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Vive la différence: biogenesis and evolution of microRNAs in plants and animals

(2011) Michael J Axtell et al.   GENOME BIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

(2010) M. J.L. de Hoon et al.   GENOME RESEARCH

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

(2009) Kevin J. Peterson et al.   BIOESSAYS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs

(2009) H. G. Parker et al.   SCIENCE

Human miRNA Precursors with Box H/ACA snoRNA Features

(2009) Michelle S. Scott et al.   PLoS Computational Biology

The evolution and functional diversification of animal microRNA genes

(2008) Na Liu et al.   CELL RESEARCH

A Human snoRNA with MicroRNA-Like Functions

(2008) Christine Ender et al.   MOLECULAR CELL

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

RNA-based gene duplication: mechanistic and evolutionary insights

(2008) Henrik Kaessmann et al.   NATURE REVIEWS GENETICS