The impact of paramutations on the invasion dynamics of transposable elements

P-element invasion fuels molecular adaptation in laboratory populations of Drosophila melanogaster

(2023) Luyang Wang et al.   EVOLUTION

Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion

(2023) Danny E. Miller et al.   PLoS Genetics

The genomic distribution of transposable elements is driven by spatially variable purifying selection

(2023) Anna M Langmüller et al.   NUCLEIC ACIDS RESEARCH

The Transposition Rate Has Little Influence on the Plateauing Level of the P-element

(2022) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Drosophila ZAD zinc finger protein Kipferl guides Rhino to piRNA clusters

(2022) Lisa Baumgartner et al.   eLife

Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation

(2021) Daniel Gebert et al.   MOLECULAR CELL

Transposon-taming piRNAs in the germline: Where do they come from?

(2021) Peiwei Chen et al.   MOLECULAR CELL

piRNA Clusters Need a Minimum Size to Control Transposable Element Invasions

(2020) Robert Kofler   Genome Biology and Evolution

Dynamics of Transposable Element Invasions with piRNA Clusters

(2019) Robert Kofler   MOLECULAR BIOLOGY AND EVOLUTION

Environmentally-induced epigenetic conversion of a piRNA cluster

(2019) Karine Casier et al.   eLife

Molecular dissection of a natural transposable element invasion

(2018) Robert Kofler et al.   GENOME RESEARCH

Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution

(2018) Irina R Arkhipova   MOLECULAR BIOLOGY AND EVOLUTION

The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element

(2018) Erin S Kelleher et al.   Genome Biology and Evolution

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans- acting factors in Drosophila melanogaster

(2017) Ana Marija Jakšić et al.   MOLECULAR ECOLOGY

Integration site selection by retroviruses and transposable elements in eukaryotes

(2017) Tania Sultana et al.   NATURE REVIEWS GENETICS

Paramutation and related phenomena in diverse species

(2016) Jay B. Hollick   NATURE REVIEWS GENETICS

Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production

(2015) C. Hermant et al.   GENETICS

The recent invasion of naturalDrosophila simulanspopulations by the P-element

(2015) Robert Kofler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient and Novel Small RNA Pathways Compensate for the Loss of piRNAs in Multiple Independent Nematode Lineages

(2015) Peter Sarkies et al.   PLOS BIOLOGY

Tempo and Mode of Transposable Element Activity in Drosophila

(2015) Robert Kofler et al.   PLoS Genetics

The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila

(2014) Fabio Mohn et al.   CELL

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

(2014) Adrien Le Thomas et al.   GENES & DEVELOPMENT

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

(2014) Sergey Shpiz et al.   PLoS Genetics

piRNA clusters and open chromatin structure

(2014) Soichiro Yamanaka et al.   Mobile DNA

History of the discovery of a master locus producing piRNAs: the flamenco/COM locus in Drosophila melanogaster

(2014) Goriaux Coline et al.   Frontiers in Genetics

Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state

(2013) A. Le Thomas et al.   GENES & DEVELOPMENT

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

(2013) V. Zanni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression

(2012) Grzegorz Sienski et al.   CELL

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

(2012) Augustin de Vanssay et al.   NATURE

A role for transcription from a piRNA cluster in de novo piRNA production

(2011) S. Kawaoka et al.   RNA

Production of artificial piRNAs in flies and mice

(2011) F. Muerdter et al.   RNA

A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution

(2010) C. Biemont   GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

(2009) J. Lu et al.   GENOME RESEARCH

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Small RNAs and the control of transposons and viruses in Drosophila

(2009) Ronald P. van Rij et al.   TRENDS IN MICROBIOLOGY

High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster

(2008) Josefa González et al.   PLOS BIOLOGY