Impact of genotype‐calling methodologies on genome‐wide association and genomic prediction in polyploids
出版年份 2023 全文链接
标题
Impact of genotype‐calling methodologies on genome‐wide association and genomic prediction in polyploids
作者
关键词
-
出版物
Plant Genome
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2023-10-31
DOI
10.1002/tpg2.20401
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Biomass yield in a genetically diverse Miscanthus sacchariflorus germplasm panel phenotyped at five locations in Asia, North America, and Europe
- (2023) Joyce N. Njuguna et al. Global Change Biology Bioenergy
- How Population Structure Impacts Genomic Selection Accuracy in Cross-Validation: Implications for Practical Breeding
- (2021) Christian R. Werner et al. Frontiers in Plant Science
- Impact of accounting for allele dosage on genomic prediction in a simulated autopolyploid sturgeon population
- (2021) Hailiang Song et al. AQUACULTURE
- Benchmarking small-variant genotyping in polyploids
- (2021) Daniel P. Cooke et al. GENOME RESEARCH
- Training Population Optimization for Genomic Selection in Miscanthus
- (2020) Marcus O. Olatoye et al. G3-Genes Genomes Genetics
- polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids
- (2019) Lindsay V. Clark et al. G3-Genes Genomes Genetics
- Genetic Mapping With Allele Dosage Information in Tetraploid Urochloa decumbens (Stapf) R. D. Webster Reveals Insights Into Spittlebug (Notozulia entreriana Berg) Resistance
- (2019) Rebecca Caroline Ulbricht Ferreira et al. Frontiers in Plant Science
- Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction
- (2019) Ivone de Bem Oliveira et al. G3-Genes Genomes Genetics
- Genome‐wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America
- (2019) Lindsay V. Clark et al. Global Change Biology Bioenergy
- Genomic Selection with Allele Dosage in Panicum maximum Jacq.
- (2019) Letícia A. de C. Lara et al. G3-Genes Genomes Genetics
- How can a high-quality genome assembly help plant breeders?
- (2019) Juliana Benevenuto et al. GigaScience
- Priors for Genotyping Polyploids
- (2019) David Gerard et al. BIOINFORMATICS
- Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato
- (2018) Jeffrey B. Endelman et al. GENETICS
- Tools for Genetic Studies in Experimental Populations of Polyploids
- (2018) Peter M. Bourke et al. Frontiers in Plant Science
- Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato
- (2018) Jeffrey B. Endelman et al. GENETICS
- Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea
- (2018) Lindsay V Clark et al. ANNALS OF BOTANY
- Molecular and Genetic Bases of Fruit Firmness Variation in Blueberry—A Review
- (2018) Francesco Cappai et al. Agronomy-Basel
- Genetic mapping of biomass yield in three interconnected Miscanthus populations
- (2017) Hongxu Dong et al. Global Change Biology Bioenergy
- Genotyping-by-sequencing approaches to characterize crop genomes: choosing the right tool for the right application
- (2017) Armin Scheben et al. PLANT BIOTECHNOLOGY JOURNAL
- Genotype Calling from Population-Genomic Sequencing Data
- (2017) Takahiro Maruki et al. G3-Genes Genomes Genetics
- A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas)
- (2017) Kenta Shirasawa et al. Scientific Reports
- Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study
- (2016) Lin Hou et al. GENETIC EPIDEMIOLOGY
- Least-Squares Means: TheRPackagelsmeans
- (2016) Russell V. Lenth Journal of Statistical Software
- Harnessing the power of RADseq for ecological and evolutionary genomics
- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
- Application of genotyping by sequencing technology to a variety of crop breeding programs
- (2016) Changsoo Kim et al. PLANT SCIENCE
- Genetics of complex traits: prediction of phenotype, identification of causal polymorphisms and genetic architecture
- (2016) M. E. Goddard et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Improving Genetic Gain with Genomic Selection in Autotetraploid Potato
- (2016) Anthony T. Slater et al. Plant Genome
- AGHmatrix: R Package to Construct Relationship Matrices for Autotetraploid and Diploid Species: A Blueberry Example
- (2016) Rodrigo R. Amadeu et al. Plant Genome
- The Genetic Architecture of Quantitative Traits Cannot Be Inferred from Variance Component Analysis
- (2016) Wen Huang et al. PLoS Genetics
- Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies
- (2016) Xiaolei Liu et al. PLoS Genetics
- The impact of genotype calling errors on family-based studies
- (2016) Qi Yan et al. Scientific Reports
- Assessment of Genetic Heterogeneity in Structured Plant Populations Using Multivariate Whole-Genome Regression Models
- (2015) C. Lehermeier et al. GENETICS
- Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
- (2015) Jennifer Spindel et al. PLoS Genetics
- A footprint of past climate change on the diversity and population structure of Miscanthus sinensis
- (2014) Lindsay V. Clark et al. ANNALS OF BOTANY
- Mapping the genome ofMiscanthus sinensisfor QTL associated with biomass productivity
- (2014) Justin M. Gifford et al. Global Change Biology Bioenergy
- Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding
- (2014) Jiangfeng He et al. Frontiers in Plant Science
- Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools
- (2013) France Dufresne et al. MOLECULAR ECOLOGY
- From QTL to QTN: Candidate Gene Set Approach and a Case Study in Porcine IGF1-FoxO Pathway
- (2013) Minghui Wang et al. PLoS One
- A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato
- (2013) Jan G. A. M. L. Uitdewilligen et al. PLoS One
- SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids
- (2013) Antonio A. F. Garcia et al. Scientific Reports
- Genomic and metabolic prediction of complex heterotic traits in hybrid maize
- (2012) Christian Riedelsheimer et al. NATURE GENETICS
- Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments
- (2012) Vanessa S. Windhausen et al. G3-Genes Genomes Genetics
- Genotyping-by-Sequencing for Plant Breeding and Genetics
- (2012) Jesse A. Poland et al. Plant Genome
- Genomic Selection in Plant Breeding: A Comparison of Models
- (2011) Nicolas Heslot et al. CROP SCIENCE
- Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
- (2011) Jeffrey B. Endelman Plant Genome
- Progress and Promise of Genome-Wide Association Studies for Human Complex Trait Genetics
- (2010) B. E. Stranger et al. GENETICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Variability in GWAS analysis: the impact of genotype calling algorithm inconsistencies
- (2010) K Miclaus et al. PHARMACOGENOMICS JOURNAL
- Practical Issues in Imputation-Based Association Mapping
- (2008) Yongtao Guan et al. PLoS Genetics
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