Genetic diversity and population structure analyses and genome-wide association studies of photoperiod sensitivity in cotton (Gossypium hirsutum L.)

Evolution of the Cotton Genus, Gossypium, and Its Domestication in the Americas

(2023) Christopher R. Viot et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Identification of quantitative trait loci for fiber quality, yield, and plant height traits in Upland cotton

(2023) Navin Shrestha et al.   CROP SCIENCE

First Report on the Genetic Diversity of Populations of Gossypium barbadense L. and Gossypium hirsutun L. in the Amazonian Native Communities, Cusco-Peru

(2023) Luis Morales-Aranibar et al.   Plants-Basel

Genome-wide association study reveals novel quantitative trait loci and candidate genes of lint percentage in upland cotton based on the CottonSNP80K array

(2022) Yu Chen et al.   THEORETICAL AND APPLIED GENETICS

Identification and genomic characterization of major effect bacterial blight resistance locus (BB-13) in Upland cotton (Gossypium hirsutum L.)

(2022) S. Anjan Gowda et al.   THEORETICAL AND APPLIED GENETICS

Genomic prediction for the Germplasm Enhancement of Maize project

(2022) Anna R. Rogers et al.   Plant Genome

Field screening of wild cotton, Gossypium hirsutum, landraces for resistance to thrips (Thysanoptera: Thripidae)

(2022) Sophia R. Conzemius et al.   CROP PROTECTION

Genetic Analysis of Mutagenesis That Induces the Photoperiod Insensitivity of Wild Cotton Gossypium hirsutum Subsp. purpurascens

(2022) Fakhriddin N. Kushanov et al.   Plants-Basel

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated tool for Genome-Wide Association Study

(2021) Lilin Yin et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Comparative study of transgenic and non‐transgenic cotton

(2021) Linghe Zeng et al.   CROP SCIENCE

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

POPULATION STRUCTURE AND GENETIC DIVERSITY OF THE PEE DEE COTTON BREEDING PROGRAM

(2021) Grant T Billings et al.   G3-Genes Genomes Genetics

Fast two-stage phasing of large-scale sequence data

(2021) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Analysis of the genetic structure and diversity of upland cotton groups in different planting areas based on SNP markers

(2021) Jungduo Wang et al.   GENE

StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis

(2020) Nicola G. Criscuolo et al.   PLoS One

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution

(2020) Gai Huang et al.   NATURE GENETICS

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

(2020) Z. Jeffrey Chen et al.   NATURE GENETICS

High‐density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China

(2020) Xinhui Nie et al.   PLANT JOURNAL

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Dissection of the genetic variation and candidate genes of lint percentage by a genome-wide association study in upland cotton

(2019) Chengxiang Song et al.   THEORETICAL AND APPLIED GENETICS

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

(2019) Zhaoen Yang et al.   Nature Communications

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genetic diversity of day-neutral converted landrace Gossypium hirsutum L. accessions

(2018) Jack C. McCarty et al.   EUPHYTICA

Assessment of Genetic Diversity, Population Structure, and Evolutionary Relationship of Uncharacterized Genes in a Novel Germplasm Collection of Diploid and Allotetraploid Gossypium Accessions Using EST and Genomic SSR Markers

(2018) Allah Ditta et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic variation of dynamic fiber elongation and developmental quantitative trait locus mapping of fiber length in upland cotton (Gossypium hirsutum L.)

(2018) Jianjiang Ma et al.   BMC GENOMICS

Genome-wide association study of yield components and fibre quality traits in a cotton germplasm diversity panel

(2017) Washington Gapare et al.   EUPHYTICA

Genetic diversity and structure of elite cotton germplasm (Gossypium hirsutum L.) using genome-wide SNP data

(2017) XianTao Ai et al.   GENETICA

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

Association mapping for seed cotton yield, yield components and fibre quality traits in upland cotton (Gossypium hirsutum L.) genotypes

(2017) Suresh S. Handi et al.   PLANT BREEDING

GenoCore: A simple and fast algorithm for core subset selection from large genotype datasets

(2017) Seongmun Jeong et al.   PLoS One

A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae)

(2017) Joseph P. Gallagher et al.   SYSTEMATIC BOTANY

QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt

(2017) Fakhriddin N. Kushanov et al.   PLoS One

ClicO FS: an interactive web-based service of Circos: Fig. 1.

(2015) Wei-Hien Cheong et al.   BIOINFORMATICS

Early Vigor of Advanced Breeding Lines and Modern Cotton Cultivars

(2015) S. Liu et al.   CROP SCIENCE

A Multivariate Genome-Wide Association Analysis of 10 LDL Subfractions, and Their Response to Statin Treatment, in 1868 Caucasians

(2015) Heejung Shim et al.   PLoS One

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

(2015) A. M. Hulse-Kemp et al.   G3-Genes Genomes Genetics

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Molecular Genetic Mapping of the Major Effect Photoperiod Response Locus in Pima Cotton ( L.)

(2014) Linglong Zhu et al.   CROP SCIENCE

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Assessing the breeding potential of day-neutral converted racestock germplasm in the Pee Dee cotton germplasm enhancement program

(2013) B. T. Campbell et al.   EUPHYTICA

Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.)

(2013) Priyanka Tyagi et al.   THEORETICAL AND APPLIED GENETICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS