PoolParty2: An integrated pipeline for analysing pooled or indexed low‐coverage whole‐genome sequencing data to discover the genetic basis of diversity
出版年份 2023 全文链接
标题
PoolParty2: An integrated pipeline for analysing pooled or indexed low‐coverage whole‐genome sequencing data to discover the genetic basis of diversity
作者
关键词
-
出版物
Molecular Ecology Resources
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2023-11-03
DOI
10.1111/1755-0998.13888
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- A beginner's guide to low‐coverage whole genome sequencing for population genomics
- (2021) Runyang Nicolas Lou et al. MOLECULAR ECOLOGY
- Whole Genome Sequencing Reveals Signatures for Artificial Selection for Different Sizes in Japanese Primitive Dog Breeds
- (2021) Guangqi Lyu et al. Frontiers in Genetics
- Pooled Sequencing Analysis of Geese (Anser cygnoides) Reveals Genomic Variations Associated With Feather Color
- (2021) Shuang Ren et al. Frontiers in Genetics
- Genomic Traces of the Fruit Fly Anastrepha obliqua Associated with Its Polyphagous Nature
- (2021) Elkin Aguirre-Ramirez et al. Insects
- Steelhead ( Oncorhynchus mykiss ) lineages and sexes show variable patterns of association of adult migration‐timing and age‐at‐maturity traits with two genomic regions
- (2020) Stuart C. Willis et al. Evolutionary Applications
- ngsLD: evaluating linkage disequilibrium using genotype likelihoods
- (2019) Emma A Fox et al. BIOINFORMATICS
- These aren't the loci you're looking for: Principles of effective SNP filtering for molecular ecologists
- (2018) Shannon J. O'Leary et al. MOLECULAR ECOLOGY
- Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach
- (2017) María Inés Fariello et al. MOLECULAR ECOLOGY
- Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
- (2016) Sean Hoban et al. AMERICAN NATURALIST
- Harnessing the power of RADseq for ecological and evolutionary genomics
- (2016) Kimberly R. Andrews et al. NATURE REVIEWS GENETICS
- The relative power of genome scans to detect local adaptation depends on sampling design and statistical method
- (2015) Katie E. Lotterhos et al. MOLECULAR ECOLOGY
- Demystifying the RAD fad
- (2014) Jonathan B. Puritz et al. MOLECULAR ECOLOGY
- Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
- (2014) Christian Schlötterer et al. NATURE REVIEWS GENETICS
- Advances and limits of using population genetics to understand local adaptation
- (2014) Peter Tiffin et al. TRENDS IN ECOLOGY & EVOLUTION
- Robust Identification of Local Adaptation from Allele Frequencies
- (2013) T. Gunther et al. GENETICS
- Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster
- (2012) Yuan Zhu et al. PLoS One
- Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring
- (2012) S. Lamichhaney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended
- (2010) Maxime Bonhomme et al. GENETICS
- The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
- (2010) Andreas Futschik et al. GENETICS
- Tackling the widespread and critical impact of batch effects in high-throughput data
- (2010) Jeffrey T. Leek et al. NATURE REVIEWS GENETICS
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
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