标题
An exploratory in silico comparison of open-source codon harmonization tools
作者
关键词
-
出版物
Microbial Cell Factories
Volume 22, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-11-06
DOI
10.1186/s12934-023-02230-y
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Challenges and progress towards industrial recombinant protein production in yeasts: A review
- (2023) Pieter De Brabander et al. BIOTECHNOLOGY ADVANCES
- UniProt: the Universal Protein Knowledgebase in 2023
- (2022) et al. NUCLEIC ACIDS RESEARCH
- Assessing optimal: inequalities in codon optimization algorithms
- (2021) Matthew J. Ranaghan et al. BMC BIOLOGY
- Engineering Cupriavidus necator H16 for the autotrophic production of (R)-1,3-butanediol
- (2021) Joshua Luke Gascoyne et al. METABOLIC ENGINEERING
- CHARMING : Harmonizing synonymous codon usage to replicate a desired codon usage pattern
- (2021) Gabriel Wright et al. PROTEIN SCIENCE
- Analysis of computational codon usage models and their association with translationally slow codons
- (2020) Gabriel Wright et al. PLoS One
- Comprehensive study on Escherichia coli genomic expression: Does position really matter?
- (2020) Anke R. Goormans et al. METABOLIC ENGINEERING
- Re-introducing non-optimal synonymous codons into codon-optimized constructs enhances soluble recovery of recombinant proteins from Escherichia coli
- (2019) Jennifer Konczal et al. PLoS One
- “CodonWizard” – An intuitive software tool with graphical user interface for customizable codon optimization in protein expression efforts
- (2019) Peter Rehbein et al. PROTEIN EXPRESSION AND PURIFICATION
- 5′ untranslated regions: the next regulatory sequence in yeast synthetic biology
- (2019) Yatti De Nijs et al. BIOLOGICAL REVIEWS
- Codon harmonization - going beyond the speed limit for protein expression
- (2018) Charlotte Mignon et al. FEBS LETTERS
- %MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding
- (2017) Anabel Rodriguez et al. PROTEIN SCIENCE
- Improving heterologous membrane protein production in Escherichia coli by combining transcriptional tuning and codon usage algorithms
- (2017) Nico J. Claassens et al. PLoS One
- Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features
- (2016) Ming-an Sun et al. BMC BIOINFORMATICS
- Critical reflections on synthetic gene design for recombinant protein expression
- (2016) Annabel HA Parret et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9
- (2016) Zachary R. Newman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Roles for Synonymous Codon Usage in Protein Biogenesis
- (2015) Julie L. Chaney et al. Annual Review of Biophysics
- Sequence and structure-based prediction of fructosyltransferase activity for functional subclassification of fungal GH32 enzymes
- (2015) Kim M. Trollope et al. FEBS Journal
- Expanding Anfinsen’s Principle: Contributions of Synonymous Codon Selection to Rational Protein Design
- (2014) Ian M. Sander et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Expression of codon optimized genes in microbial systems: current industrial applications and perspectives
- (2014) Claudia Elena et al. Frontiers in Microbiology
- EuGene: maximizing synthetic gene design for heterologous expression
- (2012) P. Gaspar et al. BIOINFORMATICS
- Industrial production of recombinant therapeutics in Escherichia coli and its recent advancements
- (2012) Chung-Jr Huang et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Silent Substitutions Predictably Alter Translation Elongation Rates and Protein Folding Efficiencies
- (2012) Paige S. Spencer et al. JOURNAL OF MOLECULAR BIOLOGY
- Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
- (2012) Sebastian Pechmann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Engineering genes for predictable protein expression
- (2012) Claes Gustafsson et al. PROTEIN EXPRESSION AND PURIFICATION
- Codon usage: Nature's roadmap to expression and folding of proteins
- (2011) Evelina Angov Biotechnology Journal
- Comparison of two codon optimization strategies to enhance recombinant protein production in Escherichia coli
- (2011) Hugo G Menzella Microbial Cell Factories
- SEQUENCE-BASED ENZYME CATALYTIC DOMAIN PREDICTION USING CLUSTERING AND AGGREGATED MUTUAL INFORMATION CONTENT
- (2011) KWANGMIN CHOI et al. Journal of Bioinformatics and Computational Biology
- Codon optimization enhances secretory expression of Pseudomonas aeruginosa exotoxin A in E. coli
- (2010) Xingxing Wang et al. PROTEIN EXPRESSION AND PURIFICATION
- Gene optimization mechanisms: A multi-gene study reveals a high success rate of full-length human proteins expressed inEscherichia coli
- (2010) Barbara Maertens et al. PROTEIN SCIENCE
- Design Parameters to Control Synthetic Gene Expression in Escherichia coli
- (2009) Mark Welch et al. PLoS One
- Coding-Sequence Determinants of Gene Expression in Escherichia coli
- (2009) G. Kudla et al. SCIENCE
- The Vienna RNA Websuite
- (2008) A. R. Gruber et al. NUCLEIC ACIDS RESEARCH
- Heterologous Protein Expression Is Enhanced by Harmonizing the Codon Usage Frequencies of the Target Gene with those of the Expression Host
- (2008) Evelina Angov et al. PLoS One
- Rare Codons Cluster
- (2008) Thomas F. Clarke et al. PLoS One
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