Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus ): current status and its characteristics

Phylogeography, population structure and evolution of coral-eating butterflyfishes (Family Chaetodontidae, genusChaetodon, subgenusCorallochaetodon)

(2016) Ellen Waldrop et al.   JOURNAL OF BIOGEOGRAPHY

Biochemical Mechanisms for Geographical Adaptations to Novel Toxin Exposures in Butterflyfish

(2016) Aileen Maldonado et al.   PLoS One

When biogeographical provinces collide: hybridization of reef fishes at the crossroads of marine biogeographical provinces in the Arabian Sea

(2015) Joseph D. DiBattista et al.   JOURNAL OF BIOGEOGRAPHY

On the origin of endemic species in the Red Sea

(2015) Joseph D. DiBattista et al.   JOURNAL OF BIOGEOGRAPHY

A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea

(2015) Joseph D. DiBattista et al.   JOURNAL OF BIOGEOGRAPHY

Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes

(2015) Pablo Saenz-Agudelo et al.   MOLECULAR ECOLOGY

The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation

(2015) Yaping Wang et al.   NATURE GENETICS

Exploring seascape genetics and kinship in the reef spongeStylissa carteriin the Red Sea

(2015) Emily C. Giles et al.   Ecology and Evolution

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Flow cytometry and K-mer analysis estimates of the genome sizes of Bemisia tabaci B and Q (Hemiptera: Aleyrodidae)

(2015) Li T. Guo et al.   Frontiers in Physiology

A Brief Review of Software Tools for Pangenomics

(2015) Jingfa Xiao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

On Bioinformatic Resources

(2015) Runsheng Chen   GENOMICS PROTEOMICS & BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

Large-scale de novo DNA synthesis: technologies and applications

(2014) Sriram Kosuri et al.   NATURE METHODS

SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

(2014) Guénola Drillon et al.   PLoS One

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

(2014) Eric B. Rondeau et al.   PLoS One

Genomic basis for the convergent evolution of electric organs

(2014) J. R. Gallant et al.   SCIENCE

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

(2013) Richard M. Leggett et al.   BIOINFORMATICS

Advances in genomics of bony fish

(2013) H. P. Spaink et al.   Briefings in Functional Genomics

Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea

(2013) Gerrit B. Nanninga et al.   MOLECULAR ECOLOGY

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Remote Sensing the Phytoplankton Seasonal Succession of the Red Sea

(2013) Dionysios E. Raitsos et al.   PLoS One

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

(2013) Y. Nakamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dfam: a database of repetitive DNA based on profile hidden Markov models

(2012) Travis J. Wheeler et al.   NUCLEIC ACIDS RESEARCH

Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features

(2012) Hiroaki Iwata et al.   NUCLEIC ACIDS RESEARCH

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea

(2011) DAVID KAMANDA NGUGI et al.   MOLECULAR ECOLOGY

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering

(2011) David R. Kelley et al.   NUCLEIC ACIDS RESEARCH

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes

(2009) D. R. BELLWOOD et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Relationships between butterflyfish (Chaetodontidae) feeding rates and coral consumption on the Great Barrier Reef

(2008) M. A. Gregson et al.   CORAL REEFS

Diversity and functional importance of coral-feeding fishes on tropical coral reefs

(2008) Andrew J. Cole et al.   FISH AND FISHERIES

Species boundaries and evolutionary lineages in the blue green damselfishes Chromis viridis and Chromis atripectoralis (Pomacentridae)

(2008) T. Froukh et al.   JOURNAL OF FISH BIOLOGY

Impact of coral predators on tropical reefs

(2008) RD Rotjan et al.   MARINE ECOLOGY PROGRESS SERIES

Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

(2008) Yong-Hwee E Loh et al.   GENOME BIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY