Unraveling prokaryotic diversity distribution and functional pattern on nitrogen and methane cycling in the subtropical Western North Pacific Ocean

Switch of Bacteria Community Under Oxygen Depletion in Sediment of Bohai Sea

(2022) Xiaoxiao Guo et al.   Frontiers in Marine Science

Sulfur cycling in oceanic oxygen minimum zones

(2021) Cameron M. Callbeck et al.   LIMNOLOGY AND OCEANOGRAPHY

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

(2021) Maggie D. Johnson et al.   Nature Communications

N2O dynamics in the western Arctic Ocean during the summer of 2017

(2021) Jang-Mu Heo et al.   Scientific Reports

Transcriptomic evidences for microbial carbon and nitrogen cycles in the deoxygenated seawaters of Bohai Sea

(2021) Yu Han et al.   ENVIRONMENT INTERNATIONAL

Microbial Ecology of Oxygen Minimum Zones Amidst Ocean Deoxygenation

(2021) Andrew M. Long et al.   Frontiers in Microbiology

Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing

(2020) Genevieve L. Fernandes et al.   Frontiers in Microbiology

Role of GlnR in controlling expression of nitrogen metabolism genes in Listeria monocytogenes

(2020) Rajesh Biswas et al.   JOURNAL OF BACTERIOLOGY

DNA stable-isotope probing highlights the effects of temperature on functionally active methanotrophs in natural wetlands

(2020) Liyan Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Substrate regulation leads to differential responses of microbial ammonia-oxidizing communities to ocean warming

(2020) Zhen-Zhen Zheng et al.   Nature Communications

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

(2020) Franziska Wemheuer et al.   Environmental Microbiome

Coupled effect of substrate and light on assimilation and oxidation of regenerated nitrogen in the euphotic ocean

(2019) Min Nina Xu et al.   LIMNOLOGY AND OCEANOGRAPHY

Scientists’ warning to humanity: microorganisms and climate change

(2019) Ricardo Cavicchioli et al.   NATURE REVIEWS MICROBIOLOGY

Proteomic Response to Rising Temperature in the Marine Cyanobacterium Synechococcus Grown in Different Nitrogen Sources

(2019) Yuan-Yuan Li et al.   Frontiers in Microbiology

Acceleration of Ocean Acidification in the Western North Pacific

(2019) Hisashi Ono et al.   GEOPHYSICAL RESEARCH LETTERS

Community-level respiration of prokaryotic microbes may rise with global warming

(2019) Thomas P. Smith et al.   Nature Communications

Response of N2O production rate to ocean acidification in the western North Pacific

(2019) Florian Breider et al.   Nature Climate Change

Achieving accurate spectrophotometric pH measurements using unpurified meta-cresol purple

(2017) N.K. Douglas et al.   MARINE CHEMISTRY

Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase

(2017) Jonathan D. Caranto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone

(2017) Clara A. Fuchsman et al.   Frontiers in Microbiology

NC10 bacteria in marine oxygen minimum zones

(2016) Cory C Padilla et al.   ISME Journal

SAR11 bacteria linked to ocean anoxia and nitrogen loss

(2016) Despina Tsementzi et al.   NATURE

Water column methanotrophy controlled by a rapid oceanographic switch

(2015) Lea Steinle et al.   Nature Geoscience

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

(2015) Jennifer B. Glass et al.   Frontiers in Microbiology

Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone

(2015) Molly T. Carolan et al.   Frontiers in Microbiology

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Increasing anthropogenic nitrogen in the North Pacific Ocean

(2014) I.-N. Kim et al.   SCIENCE

Organic Matter Stoichiometry, Flux, and Oxygen Control Nitrogen Loss in the Ocean

(2014) A. R. Babbin et al.   SCIENCE

Archaea in Biogeochemical Cycles

(2013) Pierre Offre et al.   Annual Review of Microbiology

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea

(2013) Hanna Farnelid et al.   ISME Journal

Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy

(2013) Harald Schunck et al.   PLoS One

Deoxygenation alters bacterial diversity and community composition in the ocean’s largest oxygen minimum zone

(2013) J. Michael Beman et al.   Nature Communications

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

(2013) M. G. Kalyuzhnaya et al.   Nature Communications

Shifts in Identity and Activity of Methanotrophs in Arctic Lake Sediments in Response to Temperature Changes

(2012) Ruo He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Response of two marine bacterial isolates to high CO2 concentration

(2012) E Teira et al.   MARINE ECOLOGY PROGRESS SERIES

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial oceanography of anoxic oxygen minimum zones

(2012) O. Ulloa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacteriumCandidatus‘Methylomirabilis oxyfera’

(2011) Ming L. Wu et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Effects of ocean acidification on microbial community composition of, and oxygen fluxes through, biofilms from the Great Barrier Reef

(2011) Verena Witt et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios

(2011) Luigi Vezzulli et al.   ISME Journal

Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil

(2011) Pravin Malla Shrestha et al.   ISME Journal

Molecular aspects of bacterial pH sensing and homeostasis

(2011) Terry A. Krulwich et al.   NATURE REVIEWS MICROBIOLOGY

The impact of reduced pH on the microbial community of the coral Acropora eurystoma

(2010) Dalit Meron et al.   ISME Journal

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The importance of cytosolic glutamine synthetase in nitrogen assimilation and recycling

(2009) Stéphanie M. Bernard et al.   NEW PHYTOLOGIST

Abyssal food limitation, ecosystem structure and climate change

(2008) C SMITH et al.   TRENDS IN ECOLOGY & EVOLUTION