Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data

Evidence for selective sweeps in the MHC gene repertoire of various cattle breeds

(2023) Sonali Sonejita Nayak et al.   ANIMAL BIOTECHNOLOGY

Detection of genome-wide copy number variation in Murrah buffaloes

(2023) Harshit Kumar et al.   ANIMAL BIOTECHNOLOGY

Uncovering genes underlying coat color variation in indigenous cattle breeds through genome-wide positive selection

(2023) Divya Rajawat et al.   ANIMAL BIOTECHNOLOGY

Landmarks in the history of selective sweeps

(2023) Manjit Panigrahi et al.   ANIMAL GENETICS

Genomic insights into the conservation of wild and domestic animal diversity: A review

(2023) Kanika Ghildiyal et al.   GENE

Progress and future perspectives of livestock genomics in India: a mini review

(2022) K.A. Saravanan et al.   ANIMAL BIOTECHNOLOGY

Role of genomics in combating COVID-19 pandemic

(2022) K.A. Saravanan et al.   GENE

Identification of important genomic footprints using eight different selection signature statistics in domestic cattle breeds

(2022) Divya Rajawat et al.   GENE

Molecular characterization of CRBR2 fragment of TLR4 gene in association with mastitis in Vrindavani cattle

(2022) Manjit Panigrahi et al.   MICROBIAL PATHOGENESIS

Revealing Genomic Footprints of Selection for Fiber and Production Traits in Three Indian Sheep Breeds

(2022) Divya Rajawat et al.   Journal of Natural Fibers

Trajectory of livestock genomics in South Asia: A comprehensive review

(2022) Manjit Panigrahi et al.   GENE

Signatures of selection in riverine buffalo populations revealed by genome-wide SNP data

(2022) K.A. Saravanan et al.   ANIMAL BIOTECHNOLOGY

Selection signatures for fiber production in commercial species: A review

(2022) Kanika Ghildiyal et al.   ANIMAL GENETICS

Single-Nucleotide Polymorphism Variations Associated With Specific Genes Putatively Identified Enhanced Genetic Predisposition for 305-Day Milk Yield in the Girolando Crossbreed

(2021) Alex Silva da Cruz et al.   Frontiers in Genetics

Genome-wide detection of copy number variations in Tharparkar cattle

(2021) Harshit Kumar et al.   ANIMAL BIOTECHNOLOGY

Detection of selection signatures in the genome of a farmed population of anadromous rainbow trout (Oncorhynchus mykiss)

(2021) María I. Cádiz et al.   GENOMICS

Genome-wide assessment of genetic diversity, linkage disequilibrium and haplotype block structure in Tharparkar cattle breed of India

(2020) K.A. Saravanan et al.   ANIMAL BIOTECHNOLOGY

Identification of Loci and Pathways Associated with Heifer Conception Rate in U.S. Holsteins

(2020) Justine M. Galliou et al.   Genes

Signatures of Selection in Composite Vrindavani Cattle of India

(2020) Akansha Singh et al.   Frontiers in Genetics

Comparative analysis of five different methods to design a breed-specific SNP panel for cattle

(2019) Harshit Kumar et al.   ANIMAL BIOTECHNOLOGY

Identification of selection signatures involved in performance traits in a paternal broiler line

(2019) Octávio Augusto Costa Almeida et al.   BMC GENOMICS

Marker discovery and associations with β-carotene content in Indian dairy cattle and buffalo breeds

(2019) F. Bertolini et al.   JOURNAL OF DAIRY SCIENCE

Dissecting closely linked association signals in combination with the mammalian phenotype database can identify candidate genes in dairy cattle

(2018) Zexi Cai et al.   BMC GENETICS

Determination of quantitative trait nucleotides by concordance analysis between quantitative trait loci and marker genotypes of US Holsteins

(2018) J.I. Weller et al.   JOURNAL OF DAIRY SCIENCE

Detecting signatures of positive selection in non-model species using genomic data

(2018) Hannah Weigand et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Functional Partitioning of Genomic Variance and Genome-Wide Association Study for Carcass Traits in Korean Hanwoo Cattle Using Imputed Sequence Level SNP Data

(2018) Mohammad S. A. Bhuiyan et al.   Frontiers in Genetics

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Association of single nucleotide polymorphisms in candidate genes previously related to genetic variation in fertility with phenotypic measurements of reproductive function in Holstein cows

(2017) M. Sofia Ortega et al.   JOURNAL OF DAIRY SCIENCE

A genome scan of recent positive selection signatures in three sheep populations

(2016) Fu-ping ZHAO et al.   Journal of Integrative Agriculture

A Meta-Assembly of Selection Signatures in Cattle

(2016) Imtiaz A. S. Randhawa et al.   PLoS One

TRES: Identification of Discriminatory and Informative SNPs from Population Genomic Data: Figure 1.

(2015) Ioannis Kavakiotis et al.   JOURNAL OF HEREDITY

Genome-wide association and biological pathway analysis for milk-fat composition in Danish Holstein and Danish Jersey cattle

(2015) Bart Buitenhuis et al.   BMC GENOMICS

Circadian Clock Proteins and Immunity

(2014) Anne M. Curtis et al.   IMMUNITY

Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle

(2014) Jared E. Decker et al.   PLoS Genetics

Effect of genetic variations within the SH2B2 gene on the growth of Chinese cattle

(2013) Mingjuan Yang et al.   GENE

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bivariate Genome-Wide Association Analysis of the Growth and Intake Components of Feed Efficiency

(2013) Nick V. L. Serão et al.   PLoS One

Amelioration of thermal stress impacts in dairy cows

(2013) Frank R. Dunshea et al.   Animal Production Science

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Genome-Wide Analysis of the World's Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection

(2012) James W. Kijas et al.   PLOS BIOLOGY

Xenopus Dbx2 is involved in primary neurogenesis and early neural plate patterning

(2011) Pengcheng Ma et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genome-wide association analysis of thirty one production, health, reproduction and body conformation traits in contemporary U.S. Holstein cows

(2011) John B Cole et al.   BMC GENOMICS

Polymorphisms in the bovine HSP90AB1 gene are associated with heat tolerance in Thai indigenous cattle

(2011) Rangsun Charoensook et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Genetics of adaptation in domestic farm animals: A review

(2010) T. Mirkena et al.   Livestock Science

Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds

(2009) et al.   SCIENCE