4.7 Article

Disruptive selection without genome-wide evolution across a migratory divide

期刊

MOLECULAR ECOLOGY
卷 25, 期 11, 页码 2529-2541

出版社

WILEY
DOI: 10.1111/mec.13521

关键词

assortative mating; bird migration; genome scan; incipient speciation; meiotic drive

资金

  1. Max-Planck Society
  2. Royal Swedish Academy of Sciences
  3. Royal Physiographic Society of Lund
  4. Banting Fellowship
  5. Knut and Alice Wallenberg Foundation
  6. Swedish National Infrastructure for Computing (SNIC)

向作者/读者索取更多资源

Transcontinental migration is a fascinating example of how animals can respond to climatic oscillation. Yet, quantitative data on fitness components are scarce, and the resulting population genetic consequences are poorly understood. Migratory divides, hybrid zones with a transition in migratory behaviour, provide a natural setting to investigate the micro-evolutionary dynamics induced by migration under sympatric conditions. Here, we studied the effects of migratory programme on survival, trait evolution and genome-wide patterns of population differentiation in a migratory divide of European barn swallows. We sampled a total of 824 individuals from both allopatric European populations wintering in central and southern Africa, respectively, along with two mixed populations from within the migratory divide. While most morphological characters varied by latitude consistent with Bergmann's rule, wing length co-varied with distance to wintering grounds. Survival data collected during a 5-year period provided strong evidence that this covariance is repeatedly generated by disruptive selection against intermediate phenotypes. Yet, selection-induced divergence did not translate into genome-wide genetic differentiation as assessed by microsatellites, mtDNA and >20 000 genome-wide SNP markers; nor did we find evidence of local genomic selection between migratory types. Among breeding populations, a single outlier locus mapped to the BUB1 gene with a role in mitotic and meiotic organization. Overall, this study provides evidence for an adaptive response to variation in migration behaviour continuously eroded by gene flow under current conditions of non-assortative mating. It supports the theoretical prediction that population differentiation is difficult to achieve under conditions of gene flow despite measurable disruptive selection.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Biochemistry & Molecular Biology

Reactivation of transposable elements following hybridization in fission yeast

Sergio Tusso, Fang Suo, Yue Liang, Li-Lin Du, Jochen B. W. Wolf

Summary: This study provides evidence for the genomic shock hypothesis in Schizosaccharomyces pombe, showing that hybridization activates transposable elements (TEs) and the degree of genomic admixture is positively correlated with the number of LTR retrotransposons.

GENOME RESEARCH (2022)

Article Biochemistry & Molecular Biology

Accumulation and ineffective silencing of transposable elements on an avian W Chromosome

Vera M. Warmuth, Matthias H. Weissensteiner, Jochen B. W. Wolf

Summary: One defining feature of TEs is their ability to move in the host genome, and host mechanisms to control TE activity is often incomplete. The W chromosome of crows acts as a source of transcriptionally active TEs, which may have negative fitness consequences for female birds.

GENOME RESEARCH (2022)

Article Ecology

Long-term data reveal effects of climate, road access, and latitude on mountain goat horn size

Daria Martchenko, Kevin S. White, Aaron B. A. Shafer

Summary: The potential negative artificial selection on horn size is a concern for hunting mountain goats. This study found that geographical location and artificial selection have little effect on horn size, while climate conditions may play a significant role. Additionally, mountain goats harvested closer to roads tend to have larger horns, possibly due to hunters' increased selectivity.

JOURNAL OF WILDLIFE MANAGEMENT (2022)

Article Genetics & Heredity

Genome assembly, annotation, and comparative analysis of the cattail Typha latifolia

Shane D. Widanagama, Joanna R. Freeland, Xinwei Xu, Aaron B. A. Shafer

Summary: Researchers have generated a high-quality whole-genome assembly of Typha latifolia using PacBio long-read and high coverage Illumina sequences, which will facilitate evolutionary and ecological studies.

G3-GENES GENOMES GENETICS (2022)

Article Biology

Estimation in the multinomial reencounter model-Where do migrating animals go and how do they survive in their destination area?

Saskia Schirmer, Franzi Korner-Nievergelt, Jan A. C. von Roenn, Volkmar Liebscher

Summary: Spatial variation in survival has significant implications for individual fitness and population dynamics. Understanding the spatial patterns of migrating animals is crucial for studying their demography.

JOURNAL OF THEORETICAL BIOLOGY (2022)

Article Ecology

Highland forest's environmental complexity drives landscape genomics and connectivity of the rodent Peromyscus melanotis

Gabriela Borja-Martinez, Daniel Tapia-Flores, Aaron B. A. Shafer, Ella Vazquez-Dominguez

Summary: This study evaluates how the environmental complexity of La Malinche volcano influences patterns of genomic variation in Peromyscus melanotis. The researchers found that the forest environmental complexity has a significant impact on dispersal, genomic structure, and connectivity patterns in this rodent. Higher elevation populations show reduced genetic variation, limited connectivity, and isolation, while intermediate elevation populations exhibit higher genetic diversity and lower connectivity.

LANDSCAPE ECOLOGY (2022)

Article Biochemistry & Molecular Biology

The genomic architecture of the passerine MHC region: High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Helena Westerdahl, Samantha Mellinger, Hanna Sigeman, Verena E. Kutschera, Estelle Proux-Wera, Max Lundberg, Matthias Weissensteiner, Allison Churcher, Ignas Bunikis, Bengt Hansson, Jochen B. W. Wolf, Maria Strandh

Summary: The MHC genomic region in birds, especially passerines, shows substantial structural differences and diversity in gene numbers. The MHC genes in passerines are found in two different chromosomal arrangements, with some genes being old and putatively orthologous among species, while others have evolved by simultaneous duplication of multiple genes.

MOLECULAR ECOLOGY RESOURCES (2022)

Article Biochemistry & Molecular Biology

Epigenetics and island-mainland divergence in an insectivorous small mammal

Marie-Laurence Cossette, Donald T. Stewart, Amin Haghani, Joseph A. Zoller, Aaron B. A. Shafer, Steve Horvath

Summary: Geographically isolated populations, such as the island population of Nova Scotia masked shrews in this study, often exhibit phenotypic and epigenetic differences compared to their mainland counterparts. This study provides novel insights into the role of DNA methylation in phenotypic and epigenetic divergence in island-mainland mammal populations.

MOLECULAR ECOLOGY (2023)

Article Biochemistry & Molecular Biology

Speciation without gene-flow in hybridizing deer

Camille Kessler, Eric Wootton, Aaron B. A. Shafer

Summary: Under the ecological speciation model, divergent selection creates barriers to gene flow and leads to reproductive isolation. Hybridisation can both promote and inhibit speciation. Using white-tailed and mule deer, we found negligible ancestral introgression and no divergence with gene flow, but localized allopatric and balancing selection. Balancing selection affected genes related to immunity, MHC, and smell perception, consistent with deer biology. The lack of historical gene flow suggests spatial separation during glaciation cycles and differentiation via genetic drift. Dobzhansky-Muller incompatibilities and selection against hybrids are hypothesized to be acting, and diversity correlations suggest advanced speciation.

MOLECULAR ECOLOGY (2023)

Article Biochemistry & Molecular Biology

Characterizing nutritional phenotypes using experimental nutrigenomics: Is there nutrient-specificity to different types of dietary stress?

Catriona L. C. Jones, Aaron B. A. Shafer, Paul C. C. Frost

Summary: In this study, nutrigenomics was used to identify nutritional biomarkers in Daphnia pulex. Transcriptome sequencing identified 13 potential biomarkers that accurately predicted the nutritional status of the zooplankter. These biomarkers were able to classify samples into the correct nutritional group with 100% accuracy. The findings provide insights into the causes and consequences of nutritional limitation in animal consumers and their responses to changes in biogeochemical cycles.

MOLECULAR ECOLOGY (2023)

Article Biochemistry & Molecular Biology

Genomic health is dependent on long-term population demographic history

Eric Wootton, Claude Robert, Jolle Taillon, Steeve Cote, Aaron B. A. Shafer

Summary: In this study, the relationships between measures of inbreeding, genomic constraint, and mutational load were investigated in white-tailed deer, caribou, and mountain goat. The results showed that mountain goats had higher inbreeding coefficients and more evolutionarily constrained regions compared to caribou and white-tailed deer. Additionally, white-tailed deer had the highest mutational load, followed by caribou, while mountain goats had the lowest.

MOLECULAR ECOLOGY (2023)

Article Multidisciplinary Sciences

Genomic evidence for homoploid hybrid speciation in a marine mammal apex predator

Fernando Lopes, Larissa R. Oliveira, Yago Beux, Amanda Kessler, Susana Cardenas-Alayza, Patricia Majluf, Diego Paez-Rosas, Jaime Chaves, Enrique Crespo, Robert L. Brownell Jr, Alastair M. M. Baylis, Maritza Sepulveda, Valentina Franco-Trecu, Carolina Loch, Bruce C. Robertson, Claire R. Peart, Jochen B. W. Wolf, Sandro L. Bonatto

Summary: Hybridization is an important source of genetic diversity and evolution, and its role in generating novel lineages has been debated in animals. We provide genomic evidence that the Peruvian fur seal (Pfs) is a genetically distinct species resulting from hybridization between the South American fur seal (SAfs) and the Galapagos fur seal (Arctocephalus galapagoensis) around 400,000 years ago. Our findings support the occurrence of homoploid hybrid speciation in Pfs and highlight the significance of hybridization in promoting biodiversity in large vertebrates.

SCIENCE ADVANCES (2023)

Article Ecology

Contrasting whole-genome and reduced representation sequencing for population demographic and adaptive inference: an alpine mammal case study

Daria Martchenko, Aaron B. A. Shafer

Summary: This study compared whole genome and reduced representation sequencing methods to study the population demographic and adaptive signals of the North American mountain goat. The results showed that both methods supported glacial-induced population vicariance and extremely low effective population size. Geography and climate variables explained a moderate proportion of genetic diversity, suggesting the role of drift and local adaptation. Whole genome sequencing had advantages over reduced representation sequencing in inferring adaptive processes and calculating runs-of-homozygosity estimates. Considering climate-induced changes and the genetically depauperate mountain goat, its long-term adaptive capabilities are questionable.

HEREDITY (2023)

Article Biology

Estimating survival in continuous space from mark-dead-recovery data - Towards a continuous version of the multinomial dead recovery model

Saskia Schirmer, Fraenzi Korner-Nievergelt, Jan A. C. von Roenn, Volkmar Liebscher

Summary: Understanding spatially varying survival is crucial for ecology and evolution of migratory animals and can aid in species conservation. This article presents a method to estimate continuous geographic variation in annual survival probability and migratory connectivity, based on density function and recovery data. The method is implemented using kernel density estimates and shows unbiased estimations with some edge effects in survival and connectivity.

JOURNAL OF THEORETICAL BIOLOGY (2023)

Article Ecology

A multivariate view of the speciation continuum

Daniel Bolnick, Amanda K. Hund, Patrik Nosil, Foen Peng, Mark Ravinet, Sean Stankowski, Swapna Subramanian, Jochen B. W. Wolf, Roman Yukilevich

Summary: The concept of a speciation continuum has gained popularity as a continuous process that may be studied by comparing different levels of divergence in modern population pairs. Stankowski and Ravinet's perspective article formally defines the speciation continuum as a continuum of reproductive isolation, based on opinions from speciation researchers. However, we propose a multivariate extension, the speciation hypercube, which has conceptual and practical advantages over the one-dimensional model, and allows for visualization and comparison of different speciation trajectories.

EVOLUTION (2023)

暂无数据