Transcriptomic plasticity in brown adipose tissue contributes to an enhanced capacity for nonshivering thermogenesis in deer mice

High-altitude ancestry and hypoxia acclimation have distinct effects on exercise capacity and muscle phenotype in deer mice

(2015) Mikaela A. Lui et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Regulatory mechanisms of metabolic flexibility in the dark-eyed junco (Junco hyemalis)

(2015) M. Stager et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Adaptive Modifications of Muscle Phenotype in High-Altitude Deer Mice Are Associated with Evolved Changes in Gene Regulation

(2015) Graham R. Scott et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intraspecific Polymorphism, Interspecific Divergence, and the Origins of Function-Altering Mutations in Deer Mouse Hemoglobin

(2015) Chandrasekhar Natarajan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene Co-expression Modules Underlying Polymorphic and Monomorphic Zooids in the Colonial Hydrozoan, Hydractinia symbiolongicarpus

(2014) D. C. Plachetzki et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE

(2013) Zachary A. Cheviron et al.   EVOLUTION

Thymosin beta4 induces angiogenesis through Notch signaling in endothelial cells

(2013) Shumin Lv et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish

(2013) Marie Filteau et al.   MOLECULAR BIOLOGY AND EVOLUTION

p62 Links β-adrenergic input to mitochondrial function and thermogenesis

(2012) Timo D. Müller et al.   JOURNAL OF CLINICAL INVESTIGATION

Contributions of phenotypic plasticity to differences in thermogenic performance between highland and lowland deer mice

(2012) Z. A. Cheviron et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice

(2012) Z. A. Cheviron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cold tolerance, cold-induced hyperphagia, and nonshivering thermogenesis are normal in α1-AMPK−/− mice

(2011) Jake D. Bauwens et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Blood Vessel Tubulogenesis Requires Rasip1 Regulation of GTPase Signaling

(2011) Ke Xu et al.   DEVELOPMENTAL CELL

Genomic insights into adaptation to high-altitude environments

(2011) Z A Cheviron et al.   HEREDITY

Transcriptomic analysis of autistic brain reveals convergent molecular pathology

(2011) Irina Voineagu et al.   NATURE

Genomic mechanisms of evolved physiological plasticity in killifish distributed along an environmental salinity gradient

(2011) A. Whitehead et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

NON-SHIVERING THERMOGENESIS AND ITS THERMOREGULATORY SIGNIFICANCE

(2010) L. JANSKý   BIOLOGICAL REVIEWS

Thermogenesis in CD-1 mice after combined chronic hypoxia and cold acclimation

(2010) Jacqueline L. Beaudry et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

(2010) Jay F. Storz et al.   EVOLUTION

Genetic differences in hemoglobin function between highland and lowland deer mice

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Phenotypic plasticity and genetic adaptation to high-altitude hypoxia in vertebrates

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Nonshivering thermogenesis and its adequate measurement in metabolic studies

(2010) B. Cannon et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

(2009) ANNE C. DALZIEL et al.   MOLECULAR ECOLOGY

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

The evolution of hierarchical gene regulatory networks

(2009) Douglas H. Erwin et al.   NATURE REVIEWS GENETICS

Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin

(2009) J. F. Storz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of angiogenesis by homotypic and heterotypic notch signalling in endothelial cells and pericytes: from basic research to potential therapies

(2008) Richard C. A. Sainson et al.   ANGIOGENESIS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Contribution of Shivering and Nonshivering Thermogenesis to Thermogenic Capacity for the Deer Mouse (Peromyscus maniculatus)

(2008) Matthew J. Van Sant et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY