Genome-wide identification of SNPs and copy number variation in common bean (Phaseolus vulgaris L.) using genotyping-by-sequencing (GBS)
出版年份 2016 全文链接
标题
Genome-wide identification of SNPs and copy number variation in common bean (Phaseolus vulgaris L.) using genotyping-by-sequencing (GBS)
作者
关键词
Common bean, Copy number variation (CNV), Genome-wide SNPs calling, Genotyping-by-sequencing (GBS), Next-generation sequencing
出版物
MOLECULAR BREEDING
Volume 36, Issue 7, Pages -
出版商
Springer Nature
发表日期
2016-06-23
DOI
10.1007/s11032-016-0512-9
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Optimization of genotyping by sequencing (GBS) data in common bean (Phaseolus vulgaris L.)
- (2016) Stephan Schröder et al. MOLECULAR BREEDING
- A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits
- (2015) Huihui Li et al. BMC GENOMICS
- Association mapping of QTLs for sclerotinia stem rot resistance in a collection of soybean plant introductions using a genotyping by sequencing (GBS) approach
- (2015) Elmer Iquira et al. BMC PLANT BIOLOGY
- RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
- (2015) O. A. Ali et al. GENETICS
- A System for Dosage-Based Functional Genomics in Poplar
- (2015) Isabelle M. Henry et al. PLANT CELL
- Genotyping-by-Sequencing Enabled Mapping and Marker Development for the Potyvirus Resistance Allele in Common Bean
- (2015) John P. Hart et al. Plant Genome
- Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms
- (2014) Maja P Greminger et al. BMC GENOMICS
- An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley
- (2014) Hui Liu et al. BMC GENOMICS
- Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea
- (2014) Deepa Jaganathan et al. MOLECULAR GENETICS AND GENOMICS
- A reference genome for common bean and genome-wide analysis of dual domestications
- (2014) Jeremy Schmutz et al. NATURE GENETICS
- TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
- (2014) Jeffrey C. Glaubitz et al. PLoS One
- Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding
- (2014) Rajeev K. Varshney et al. PLOS BIOLOGY
- Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing
- (2013) T. M. Beissinger et al. GENETICS
- Genome-wide single nucleotide polymorphism and Insertion-Deletion discovery through next-generation sequencing of reduced representation libraries in common bean
- (2013) Xiaolu Zou et al. MOLECULAR BREEDING
- Genotyping-by-Sequencing (GBS): A Novel, Efficient and Cost-Effective Genotyping Method for Cattle Using Next-Generation Sequencing
- (2013) Marcos De Donato et al. PLoS One
- Copy number polymorphism in plant genomes
- (2013) Agnieszka Żmieńko et al. THEORETICAL AND APPLIED GENETICS
- ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data
- (2012) Christopher R Cabanski et al. BMC BIOINFORMATICS
- Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing
- (2012) Jennifer Monson-Miller et al. BMC GENOMICS
- Current state-of-art of sequencing technologies for plant genomics research
- (2012) M. Thudi et al. Briefings in Functional Genomics
- A beginners guide to SNP calling from high-throughput DNA-sequencing data
- (2012) André Altmann et al. HUMAN GENETICS
- Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes
- (2012) Elena Bitocchi et al. NEW PHYTOLOGIST
- Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes
- (2012) L. K. McHale et al. PLANT PHYSIOLOGY
- Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
- (2012) D. E. Cook et al. SCIENCE
- Genetic and epigenetic regulation of stress responses in natural plant populations
- (2011) Clícia Grativol et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Genetic diversity and selection of genotypes to enhance Zn and Fe content in common bean
- (2010) Z I Talukder et al. CANADIAN JOURNAL OF PLANT SCIENCE
- Copy Number Variation Shapes Genome Diversity in Arabidopsis Over Immediate Family Generational Scales
- (2010) Seth DeBolt Genome Biology and Evolution
- Adaptation genomics: the next generation
- (2010) Jessica Stapley et al. TRENDS IN ECOLOGY & EVOLUTION
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
- (2009) M. Gouy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
- (2009) Stéphane Deschamps et al. MOLECULAR BREEDING
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started