Computational Systems Biology Approach Predicts Regulators and Targets of microRNAs and Their Genomic Hotspots in Apoptosis Process

Genome-wide analysis of alternative splicing events inHordeum vulgare: Highlighting retention of intron-based splicing and its possible function through network analysis

(2015) Bahman Panahi et al.   FEBS LETTERS

Knowledge discovery and sequence-based prediction of pandemic influenza using an integrated classification and association rule mining (CBA) algorithm

(2015) Fatemeh Kargarfard et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A novel pairwise comparison method for in silico discovery of statistically significant cis-regulatory elements in eukaryotic promoter regions: Application to Arabidopsis

(2015) Roohollah Shamloo-Dashtpagerdi et al.   JOURNAL OF THEORETICAL BIOLOGY

Gene regulatory network in almond (Prunus dulcis Mill.) in response to frost stress

(2015) Arghavan Alisoltani et al.   Tree Genetics & Genomes

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

MicroRNAs Are Part of the Regulatory Network that Controls EGF Induced Apoptosis, Including Elements of the JAK/STAT Pathway, in A431 Cells

(2015) Ibrahim Alanazi et al.   PLoS One

A functional genomics catalogue of activated transcription factors during pathogenesis of pneumococcal disease

(2014) Layla K Mahdi et al.   BMC GENOMICS

Differentiation of P19 embryonal carcinoma stem cells into insulin-producing cells promoted by pancreas-conditioned medium

(2014) Akram Mansouri et al.   Journal of Tissue Engineering and Regenerative Medicine

Efficient and Simple Production of Insulin-Producing Cells from Embryonal Carcinoma Stem Cells Using Mouse Neonate Pancreas Extract, As a Natural Inducer

(2014) Marzieh Ebrahimie et al.   PLoS One

Prediction of Potential Cancer-Risk Regions Based on Transcriptome Data: Towards a Comprehensive View

(2014) Arghavan Alisoltani et al.   PLoS One

The p53/miR-34 axis in development and disease

(2014) M. Rokavec et al.   Journal of Molecular Cell Biology

Combined gene expression and proteomic analysis of EGF induced apoptosis in A431 cells suggests multiple pathways trigger apoptosis

(2013) Ibrahim Alanazi et al.   APOPTOSIS

Underlying functional genomics of fat deposition in adipose tissue

(2013) Mohammad Reza Bakhtiarizadeh et al.   GENE

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network

(2013) Batool Hosseinpour et al.   GENE

Transcriptional regulatory network analysis of the over-expressed genes in adipose tissue

(2013) Mohammad Reza Bakhtiarizadeh et al.   Genes & Genomics

Comparative GO: A Web Application for Comparative Gene Ontology and Gene Ontology-Based Gene Selection in Bacteria

(2013) Mario Fruzangohar et al.   PLoS One

A Transcription Factor Contributes to Pathogenesis and Virulence in Streptococcus pneumoniae

(2013) Layla K. Mahdi et al.   PLoS One

Crosstalk between transcription factors and microRNAs in human protein interaction network

(2012) Chen-Ching Lin et al.   BMC Systems Biology

Protein Interaction Network of Arabidopsis thaliana Female Gametophyte Development Identifies Novel Proteins and Relations

(2012) Batool Hosseinpour et al.   PLoS One

An autocrine TGF-β/ZEB/miR-200 signaling network regulates establishment and maintenance of epithelial-mesenchymal transition

(2011) Philip A. Gregory et al.   MOLECULAR BIOLOGY OF THE CELL

microRNA evolution in a human transcription factor and microRNA regulatory network

(2010) Chengxiang Qiu et al.   BMC Systems Biology

The ZEB/miR-200 feedback loop—a motor of cellular plasticity in development and cancer?

(2010) Simone Brabletz et al.   EMBO REPORTS

Impact of hepatitis B virus infection on outcome following resection for intrahepatic cholangiocarcinoma

(2010) Lei Zhang et al.   JOURNAL OF SURGICAL ONCOLOGY

PRDM1 Is Required for Mantle Cell Lymphoma Response to Bortezomib

(2010) S. Desai et al.   MOLECULAR CANCER RESEARCH

Common variants at 19p13 are associated with susceptibility to ovarian cancer

(2010) Kelly L Bolton et al.   NATURE GENETICS

Knockdown of ERp57 increases BiP/GRP78 induction and protects against hyperoxia and tunicamycin-induced apoptosis

(2009) Dong Xu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Bcl-2 Inhibitors: Targeting Mitochondrial Apoptotic Pathways in Cancer Therapy

(2009) M. H. Kang et al.   CLINICAL CANCER RESEARCH

HuR recruits let-7/RISC to repress c-Myc expression

(2009) H. H. Kim et al.   GENES & DEVELOPMENT

Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer

(2009) Nicole Pressinotti et al.   Molecular Cancer

Lin-28B transactivation is necessary for Myc-mediated let-7 repression and proliferation

(2009) T.-C. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of Prdx6 and resistance to peroxide-induced death in Hepa1-6 cells: Prdx suppression increases apoptosis

(2009) Bridget Walsh et al.   REDOX REPORT

Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer

(2008) Mads Thomassen et al.   BMC CANCER