Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome ProceedsViaHigh Specificity

In vitro innate immune cell based models to assess whole cell Bordetella pertussis vaccine quality: A proof of principle

(2015) M.E. Hoonakker et al.   BIOLOGICALS

The nature of self for T cells—a systems-level perspective

(2015) Diana P Granados et al.   CURRENT OPINION IN IMMUNOLOGY

Extended O-GlcNAc on HLA Class-I-Bound Peptides

(2015) Fabio Marino et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

(2015) Michal Bassani-Sternberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Citrullinated peptide dendritic cell immunotherapy in HLA risk genotype–positive rheumatoid arthritis patients

(2015) Helen Benham et al.   Science Translational Medicine

Ventromedial hypothalamic neurons control a defensive emotion state

(2015) Prabhat S Kunwar et al.   eLife

Bordetella pertussis Proteins Dominating the Major Histocompatibility Complex Class II-Presented Epitope Repertoire in Human Monocyte-Derived Dendritic Cells

(2014) Rachel M. Stenger et al.   Clinical and Vaccine Immunology

Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires

(2014) Elin Bergseng et al.   IMMUNOGENETICS

CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation

(2014) Chin-Sheng Yu et al.   PLoS One

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD)

(2014) G. P. M. Mommen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Profiling of Diet-Induced Neuropeptide Changes in Rat Brain by Quantitative Mass Spectrometry

(2013) Christian K. Frese et al.   ANALYTICAL CHEMISTRY

Pathways of Antigen Processing

(2013) Janice S. Blum et al.   Annual Review of Immunology

Composition of the HLA-DR-associated human thymus peptidome

(2013) Javier A. Collado et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ

(2013) Edita Karosiene et al.   IMMUNOGENETICS

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Proteolytic Characteristics of Cathepsin D Related to the Recognition and Cleavage of Its Target Proteins

(2013) Huiying Sun et al.   PLoS One

Exploring the MHC-peptide matrix of central tolerance in the human thymus

(2013) Eleni Adamopoulou et al.   Nature Communications

Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry

(2012) Christian K. Frese et al.   ANALYTICAL CHEMISTRY

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach

(2012) Massimo Andreatta et al.   BIOINFORMATICS

Major Histocompatibility Complex Class II+Invariant Chain Negative Breast Cancer Cells Present Unique Peptides that Activate Tumor-specific T Cells from Breast Cancer Patients

(2012) Olesya Chornoguz et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-scale Identification of Endogenous Secretory Peptides Using Electron Transfer Dissociation Mass Spectrometry

(2012) Kazuki Sasaki et al.   MOLECULAR & CELLULAR PROTEOMICS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Quorum-Sensing in CD4+ T Cell Homeostasis: A Hypothesis and a Model

(2012) Afonso R. M. Almeida et al.   Frontiers in Immunology

Targeting the MHC Class II antigen presentation pathway in cancer immunotherapy

(2012) Jacques Thibodeau et al.   OncoImmunology

The endosome–lysosome pathway and information generation in the immune system

(2011) Colin Watts   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Tumor-Derived Autophagosome Vaccine: Mechanism of Cross-Presentation and Therapeutic Efficacy

(2011) Y. Li et al.   CLINICAL CANCER RESEARCH

Mass Spectrometry Analysis and Quantitation of Peptides Presented on the MHC II Molecules of Mouse Spleen Dendritic Cells

(2011) Leonia Bozzacco et al.   JOURNAL OF PROTEOME RESEARCH

Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos

(2011) Christian K. Frese et al.   JOURNAL OF PROTEOME RESEARCH

HLA-DR-presented Peptide Repertoires Derived From Human Monocyte-derived Dendritic Cells Pulsed With Blood Coagulation Factor VIII

(2011) Simon D. van Haren et al.   MOLECULAR & CELLULAR PROTEOMICS

Response of MUTZ-3 dendritic cells to the different components of the Haemophilus influenzae type B conjugate vaccine: Towards an in vitro assay for vaccine immunogenicity

(2011) Marcel H.N. Hoefnagel et al.   VACCINE

Peptides Presented by HLA-DR Molecules in Synovia of Patients with Rheumatoid Arthritis or Antibiotic-Refractory Lyme Arthritis

(2010) Robert J. Seward et al.   MOLECULAR & CELLULAR PROTEOMICS

A Quantitative Proteomics Design for Systematic Identification of Protease Cleavage Events

(2010) Francis Impens et al.   MOLECULAR & CELLULAR PROTEOMICS

Autophagy and Its Role in MHC-Mediated Antigen Presentation

(2009) V. L. Crotzer et al.   JOURNAL OF IMMUNOLOGY

Naturally Presented Peptides on Major Histocompatibility Complex I and II Molecules Eluted from Central Nervous System of Multiple Sclerosis Patients

(2009) Nicolas Fissolo et al.   MOLECULAR & CELLULAR PROTEOMICS

Improved visualization of protein consensus sequences by iceLogo

(2009) Niklaas Colaert et al.   NATURE METHODS

Systematic Characterisation of Cellular Localisation and Expression Profiles of Proteins Containing MHC Ligands

(2009) Agnieszka S. Juncker et al.   PLoS One

Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy

(2009) F. R. Depontieu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhancing Immunity Through Autophagy

(2008) Christian Münz   Annual Review of Immunology

The rheumatoid arthritis-associated allele HLA-DR10 (DRB1*1001) shares part of its repertoire with HLA-DR1 (DRB1*0101) and HLA-DR4 (DRB*0401)

(2008) Iñaki Alvarez et al.   ARTHRITIS AND RHEUMATISM

Efficient Cross-presentation Depends on Autophagy in Tumor Cells

(2008) Y. Li et al.   CANCER RESEARCH

Dendritic cells and cytokines in human inflammatory and autoimmune diseases

(2008) P BLANCO et al.   CYTOKINE & GROWTH FACTOR REVIEWS

The MHC class I peptide repertoire is molded by the transcriptome

(2008) Marie-Hélène Fortier et al.   JOURNAL OF EXPERIMENTAL MEDICINE