Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions
出版年份 2016 全文链接
标题
Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions
作者
关键词
-
出版物
MOLECULAR & CELLULAR PROTEOMICS
Volume 15, Issue 6, Pages 1895-1912
出版商
American Society for Biochemistry & Molecular Biology (ASBMB)
发表日期
2016-03-17
DOI
10.1074/mcp.m116.058016
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- XBP1s Links the Unfolded Protein Response to the Molecular Architecture of Mature N-Glycans
- (2015) Mahender B. Dewal et al. CHEMISTRY & BIOLOGY
- Enhanced Aromatic Sequons Increase Oligosaccharyltransferase Glycosylation Efficiency and Glycan Homogeneity
- (2015) Amber N. Murray et al. CHEMISTRY & BIOLOGY
- Analysis of site-specificN-glycan remodeling in the endoplasmic reticulum and the Golgi
- (2015) Ivan Hang et al. GLYCOBIOLOGY
- Glycosylation Analysis of Engineered H3N2 Influenza A Virus Hemagglutinins with Sequentially Added Historically Relevant Glycosylation Sites
- (2015) Yanming An et al. JOURNAL OF PROTEOME RESEARCH
- Molecular Characterisation of the Haemagglutinin Glycan-Binding Specificity of Egg-Adapted Vaccine Strains of the Pandemic 2009 H1N1 Swine Influenza A Virus
- (2015) Vincenzo Carbone et al. MOLECULES
- Glycosylation at hemagglutinin Asn-167 protects the H6N1 avian influenza virus from tryptic cleavage at Arg-201 and maintains the viral infectivity
- (2015) Jie-Long He et al. VIRUS RESEARCH
- New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets
- (2014) Zhikai Zhu et al. ANALYTICAL CHEMISTRY
- Advances in LC–MS/MS-based glycoproteomics: Getting closer to system-wide site-specific mapping of the N- and O-glycoproteome
- (2014) Morten Thaysen-Andersen et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Confident Assignment of Site-Specific Glycosylation in Complex Glycoproteins in a Single Step
- (2014) Kshitij Khatri et al. JOURNAL OF PROTEOME RESEARCH
- A predictive fitness model for influenza
- (2014) Marta Łuksza et al. NATURE
- Alzheimer's Associated β-Amyloid Protein Inhibits Influenza A Virus and Modulates Viral Interactions with Phagocytes
- (2014) Mitchell R. White et al. PLoS One
- Vaccination of monoglycosylated hemagglutinin induces cross-strain protection against influenza virus infections
- (2014) J.-R. Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Playing Hide and Seek: How Glycosylation of the Influenza Virus Hemagglutinin Can Modulate the Immune Response to Infection
- (2014) Michelle Tate et al. Viruses-Basel
- Conserved and host-specific features of influenza virion architecture
- (2014) Edward C. Hutchinson et al. Nature Communications
- Biogenesis of Influenza A Virus Hemagglutinin Cross-Protective Stem Epitopes
- (2014) Javier G. Magadán et al. PLoS Pathogens
- Absolute Quantitation of Immunoglobulin G and Its Glycoforms Using Multiple Reaction Monitoring
- (2013) Qiuting Hong et al. ANALYTICAL CHEMISTRY
- Molecular Mechanisms of Inhibition of Influenza by Surfactant Protein D Revealed by Large-Scale Molecular Dynamics Simulation
- (2013) Boon Chong Goh et al. BIOCHEMISTRY
- N-linked protein glycosylation in the ER
- (2013) Markus Aebi BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Structural Determinants for Naturally Evolving H5N1 Hemagglutinin to Switch Its Receptor Specificity
- (2013) Kannan Tharakaraman et al. CELL
- The amazing innate immune response to influenza A virus infection
- (2013) Shweta Tripathi et al. Innate Immunity
- PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
- (2013) Daniel R. Roe et al. Journal of Chemical Theory and Computation
- Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald
- (2013) Romelia Salomon-Ferrer et al. Journal of Chemical Theory and Computation
- Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff
- (2013) Anita K. Nivedha et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- A Single Amino Acid Substitution in the Hemagglutinin of H3N2 Subtype Influenza A Viruses Is Associated with Resistance to the Long Pentraxin PTX3 and Enhanced Virulence in Mice
- (2013) E. R. Job et al. JOURNAL OF IMMUNOLOGY
- N-Linked Glycosylation of the Hemagglutinin Protein Influences Virulence and Antigenicity of the 1918 Pandemic and Seasonal H1N1 Influenza A Viruses
- (2013) X. Sun et al. JOURNAL OF VIROLOGY
- Glycopeptide Analysis, Recent Developments and Applications
- (2013) Heather Desaire MOLECULAR & CELLULAR PROTEOMICS
- Pathways to human adaptation
- (2013) David A. Steinhauer NATURE
- Glycosylation on Hemagglutinin Affects the Virulence and Pathogenicity of Pandemic H1N1/2009 Influenza A Virus in Mice
- (2013) Yan Zhang et al. PLoS One
- Production and stabilization of the trimeric influenza hemagglutinin stem domain for potentially broadly protective influenza vaccines
- (2013) Y. Lu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Preferential Recognition of Avian-Like Receptors in Human Influenza A H7N9 Viruses
- (2013) R. Xu et al. SCIENCE
- Glycosylations in the Globular Head of the Hemagglutinin Protein Modulate the Virulence and Antigenic Properties of the H1N1 Influenza Viruses
- (2013) R. A. Medina et al. Science Translational Medicine
- Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic
- (2013) Kannan Tharakaraman et al. Scientific Reports
- Software for automated interpretation of mass spectrometry data from glycans and glycopeptides
- (2012) Carrie L. Woodin et al. ANALYST
- Glycosylation at Asn91of H1N1 haemagglutinin affects binding to glycan receptors
- (2012) Akila Jayaraman et al. BIOCHEMICAL JOURNAL
- Automated glycopeptide analysis--review of current state and future directions
- (2012) D. C. Dallas et al. BRIEFINGS IN BIOINFORMATICS
- Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance
- (2012) R. Burke Squires et al. Influenza and Other Respiratory Viruses
- A Unique Sugar-binding Site Mediates the Distinct Anti-influenza Activity of Pig Surfactant Protein D
- (2012) Martin van Eijk et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born
- (2012) Andreas W. Götz et al. Journal of Chemical Theory and Computation
- Toward Animal Cell Culture-Based Influenza Vaccine Design: Viral Hemagglutinin N-Glycosylation Markedly Impacts Immunogenicity
- (2012) J. Hutter et al. JOURNAL OF IMMUNOLOGY
- Semi-Automated Identification of N-Glycopeptides by Hydrophilic Interaction Chromatography, nano-Reverse-Phase LC–MS/MS, and Glycan Database Search
- (2012) Petr Pompach et al. JOURNAL OF PROTEOME RESEARCH
- GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data
- (2012) Evan Maxwell et al. PLoS One
- Influenza-Infected Neutrophils within the Infected Lungs Act as Antigen Presenting Cells for Anti-Viral CD8+ T Cells
- (2012) Matthew M. Hufford et al. PLoS One
- Mutagenesis of Surfactant Protein D Informed by Evolution and X-ray Crystallography Enhances Defenses against Influenza A Virusin Vivo
- (2011) Erika Crouch et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification
- (2011) Jing Zhang et al. MOLECULAR & CELLULAR PROTEOMICS
- Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy
- (2011) S. R. Das et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The ability of pandemic influenza virus hemagglutinins to induce lower respiratory pathology is associated with decreased surfactant protein D binding
- (2011) Li Qi et al. VIROLOGY
- Pandemic H1N1 Influenza A Viruses Are Resistant to the Antiviral Activities of Innate Immune Proteins of the Collectin and Pentraxin Superfamilies
- (2010) E. R. Job et al. JOURNAL OF IMMUNOLOGY
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- mzML—a Community Standard for Mass Spectrometry Data
- (2010) Lennart Martens et al. MOLECULAR & CELLULAR PROTEOMICS
- Colorectal Cancer-Specific Cytochrome P450 2W1: Intracellular Localization, Glycosylation, and Catalytic Activity
- (2010) A. Gomez et al. MOLECULAR PHARMACOLOGY
- GlycomeDB--a unified database for carbohydrate structures
- (2010) R. Ranzinger et al. NUCLEIC ACIDS RESEARCH
- Finding new posttranslational modifications in salivary proline-rich proteins
- (2010) Rui Vitorino et al. PROTEOMICS
- Cross-Neutralization of 1918 and 2009 Influenza Viruses: Role of Glycans in Viral Evolution and Vaccine Design
- (2010) C.-J. Wei et al. Science Translational Medicine
- The influenza A virus hemagglutinin glycosylation state affects receptor-binding specificity
- (2010) Robert P. de Vries et al. VIROLOGY
- Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain
- (2010) Suman R. Das et al. PLoS Pathogens
- Software Tool for Researching Annotations of Proteins: Open-Source Protein Annotation Software with Data Visualization
- (2009) Vivek N. Bhatia et al. ANALYTICAL CHEMISTRY
- Improved Hydrophilic Interaction Chromatography LC/MS of Heparinoids Using a Chip with Postcolumn Makeup Flow
- (2009) Gregory O. Staples et al. ANALYTICAL CHEMISTRY
- Recognition of Mannosylated Ligands and Influenza A Virus by Human Surfactant Protein D: Contributions of an Extended Site and Residue 343†,‡
- (2009) Erika Crouch et al. BIOCHEMISTRY
- Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
- (2009) Navdeep Jaitly et al. BMC BIOINFORMATICS
- Determination of glycosylation sites and site-specific heterogeneity in glycoproteins
- (2009) Hyun Joo An et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Darwinian selection for sites of Asn-linked glycosylation in phylogenetically disparate eukaryotes and viruses
- (2009) J. Cui et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- GlycomeDB – integration of open-access carbohydrate structure databases
- (2008) René Ranzinger et al. BMC BIOINFORMATICS
- Innate immunity to influenza virus: implications for future therapy
- (2008) Mitchell R White et al. Expert Review of Clinical Immunology
- N-Glycoproteomics – An automated workflow approach
- (2008) Sakari Joenväärä et al. GLYCOBIOLOGY
- When can glycopeptides be assigned based solely on high-resolution mass spectrometry data?
- (2008) Heather Desaire et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Glycosylation of Asn-76 in mouse GPIHBP1 is critical for its appearance on the cell surface and the binding of chylomicrons and lipoprotein lipase
- (2008) Anne P. Beigneux et al. JOURNAL OF LIPID RESEARCH
- Recent Avian H5N1 Viruses Exhibit Increased Propensity for Acquiring Human Receptor Specificity
- (2008) James Stevens et al. JOURNAL OF MOLECULAR BIOLOGY
- Changing Selective Pressure during Antigenic Changes in Human Influenza H3
- (2008) Benjamin P. Blackburne et al. PLoS Pathogens
- Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases
- (2007) Lukas Käll et al. JOURNAL OF PROTEOME RESEARCH
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