Performance of targeted next-generation sequencing in the detection of respiratory pathogens and antimicrobial resistance genes for children

Evaluation of Metagenomic and Targeted Next-Generation Sequencing Workflows for Detection of Respiratory Pathogens from Bronchoalveolar Lavage Fluid Specimens

(2022) David C. Gaston et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Development of receptor binding domain-based double-antigen sandwich lateral flow immunoassay for the detection and evaluation of SARS-CoV-2 neutralizing antibody in clinical sera samples compared with the conventional virus neutralization test

(2022) Ying Zhang et al.   TALANTA

Epidemiological characteristics of four common respiratory viral infections in children

(2021) Guohong Zhu et al.   Virology Journal

The association between bacteria colonizing the upper respiratory tract and lower respiratory tract infection in young children: a systematic review and meta-analysis

(2021) Shantelle Claassen-Weitz et al.   CLINICAL MICROBIOLOGY AND INFECTION

Fitness cost and compensation mechanism of sulfonamide resistance genes ( sul1 , sul2 , and sul3 ) in Escherichia coli

(2021) Yuqiao Zhou et al.   ENVIRONMENTAL MICROBIOLOGY

Viral and Bacterial Co-Infections in the Lungs: Dangerous Liaisons

(2021) Justine Oliva et al.   Viruses-Basel

Etiological and epidemiological features of acute respiratory infections in China

(2021) Zhong-Jie Li et al.   Nature Communications

Targeting RNA with Next‐ and Third‐Generation Sequencing Improves Pathogen Identification in Clinical Samples

(2021) Na Zhao et al.   Advanced Science

Innovative and rapid antimicrobial susceptibility testing systems

(2020) Alex van Belkum et al.   NATURE REVIEWS MICROBIOLOGY

Increased Detection of Viruses in Children with Respiratory Tract Infection Using PCR

(2020) Chien-Yu Lin et al.   International Journal of Environmental Research and Public Health

Complicated pneumonia in children

(2020) Fernando M de Benedictis et al.   LANCET

Antibiotic resistance and persistence—Implications for human health and treatment perspectives

(2020) Markus Huemer et al.   EMBO REPORTS

Pertussis (Whooping Cough)

(2020) Michael D Decker et al.   JOURNAL OF INFECTIOUS DISEASES

How to accelerate antimicrobial susceptibility testing

(2019) Evgeny A. Idelevich et al.   CLINICAL MICROBIOLOGY AND INFECTION

Metagenomic analysis using next-generation sequencing of pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure

(2019) Suguru Takeuchi et al.   Scientific Reports

Retrospective Validation of a Metagenomic Sequencing Protocol for Combined Detection of RNA and DNA Viruses Using Respiratory Samples from Pediatric Patients

(2019) Sander van Boheemen et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes

(2018) Xiaole Yin et al.   BIOINFORMATICS

Next-generation sequencing technologies and their application to the study and control of bacterial infections

(2018) J. Besser et al.   CLINICAL MICROBIOLOGY AND INFECTION

The Growing Threat of Antibiotic Resistance in Children

(2018) Rachel L. Medernach et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Development and Optimization of Metagenomic Next-Generation Sequencing Methods for Cerebral Spinal Fluid Diagnostics

(2018) Patricia J Simner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Streptococcus pneumoniae: transmission, colonization and invasion

(2018) Jeffrey N. Weiser et al.   NATURE REVIEWS MICROBIOLOGY

Mycobacterium tuberculosis

(2018) Anastasia Koch et al.   TRENDS IN MICROBIOLOGY

Estimates of the global, regional, and national morbidity, mortality, and aetiologies of lower respiratory infections in 195 countries, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016

(2018) Christopher Troeger et al.   LANCET INFECTIOUS DISEASES

Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection

(2018) Wei Gu et al.   Annual Review of Pathology-Mechanisms of Disease

Targeted next-generation sequencing reveals recurrence-associated genomic alterations in early-stage non-small cell lung cancer

(2018) William C.S. Cho et al.   Oncotarget

The microbiota of the respiratory tract: gatekeeper to respiratory health

(2017) Wing Ho Man et al.   NATURE REVIEWS MICROBIOLOGY

Exome sequencing covers >98% of mutations identified on targeted next generation sequencing panels

(2017) Holly LaDuca et al.   PLoS One

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Aetiological role of common respiratory viruses in acute lower respiratory infections in children under five years: A systematic review and meta–analysis

(2015) Ting Shi et al.   Journal of Global Health

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Inflammatory response in mixed viral-bacterial community-acquired pneumonia

(2014) Salvador Bello et al.   BMC Pulmonary Medicine

Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

(2014) Claire Chewapreecha et al.   PLoS Genetics

Exploring Variation of Antibiotic Resistance Genes in Activated Sludge over a Four-Year Period through a Metagenomic Approach

(2013) Ying Yang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Molecular mechanisms of β-lactam resistance inStreptococcus pneumoniae

(2012) Regine Hakenbeck et al.   Future Microbiology

Viral pneumonia

(2011) Olli Ruuskanen et al.   LANCET