Microbial composition, rumen fermentation parameters, enteric methane emissions, and lactational performance of phenotypically high and low methane-emitting dairy cows

Symposium review: Understanding the role of the rumen microbiome in enteric methane mitigation and productivity in dairy cows

(2022) Dipti Pitta et al.   JOURNAL OF DAIRY SCIENCE

Full adoption of the most effective strategies to mitigate methane emissions by ruminants can help meet the 1.5 °C target by 2030 but not 2050

(2022) Claudia Arndt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bovine host genome acts on rumen microbiome function linked to methane emissions

(2022) Marina Martínez-Álvaro et al.   Communications Biology

Symposium review: Effective nutritional strategies to mitigate enteric methane in dairy cattle

(2022) A.N. Hristov et al.   JOURNAL OF DAIRY SCIENCE

Genomic insights into the physiology of Quinella, an iconic uncultured rumen bacterium

(2022) Sandeep Kumar et al.   Nature Communications

Effects of the macroalga Asparagopsis taxiformis and oregano leaves on methane emission, rumen fermentation, and lactational performance of dairy cows

(2021) H.A. Stefenoni et al.   JOURNAL OF DAIRY SCIENCE

Temporal changes in total and metabolically active ruminal methanogens in dairy cows supplemented with 3-nitrooxypropanol

(2021) D.W. Pitta et al.   JOURNAL OF DAIRY SCIENCE

Using Structural Equation Modeling to Understand Interactions Between Bacterial and Archaeal Populations and Volatile Fatty Acid Proportions in the Rumen

(2021) Veronica Kaplan-Shabtai et al.   Frontiers in Microbiology

Symposium review: How to implement genomic selection

(2020) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Comparison of Two Sampling Techniques for Evaluating Ruminal Fermentation and Microbiota in the Planktonic Phase of Rumen Digesta in Dairy Cows

(2020) Camila Flavia de Assis Lage et al.   Frontiers in Microbiology

Effects of 3-nitrooxypropanol on rumen fermentation, lactational performance, and resumption of ovarian cyclicity in dairy cows

(2019) A. Melgar et al.   JOURNAL OF DAIRY SCIENCE

Accuracy of methane emissions predicted from milk mid-infrared spectra and measured by laser methane detectors in Brown Swiss dairy cows

(2019) T.M. Denninger et al.   JOURNAL OF DAIRY SCIENCE

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

(2018) Andrea Söllinger et al.   mSystems

Species-level functional profiling of metagenomes and metatranscriptomes

(2018) Eric A. Franzosa et al.   NATURE METHODS

Between-cow variation in digestion and rumen fermentation variables associated with methane production

(2017) E.H. Cabezas-Garcia et al.   JOURNAL OF DAIRY SCIENCE

The ruminal microbiome associated with methane emissions from ruminant livestock

(2017) Ilma Tapio et al.   Journal of Animal Science and Biotechnology

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Genetic and phenotypic variance and covariance components for methane emission and postweaning traits in Angus cattle12

(2016) K. A. Donoghue et al.   JOURNAL OF ANIMAL SCIENCE

Heritability estimates for enteric methane emissions from Holstein cattle measured using noninvasive methods

(2016) Jan Lassen et al.   JOURNAL OF DAIRY SCIENCE

Effect of 3-nitrooxypropanol on methane and hydrogen emissions, methane isotopic signature, and ruminal fermentation in dairy cows

(2016) J.C. Lopes et al.   JOURNAL OF DAIRY SCIENCE

Effects of ruminal digesta retention time on methane emissions: a modelling approach

(2016) P. Huhtanen et al.   Animal Production Science

Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

(2016) Rainer Roehe et al.   PLoS Genetics

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

(2016) Janine Kamke et al.   Microbiome

Animal board invited review: genetic possibilities to reduce enteric methane emissions from ruminants

(2015) N. K. Pickering et al.   Animal

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency

(2015) Kelsea A. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The rumen microbial metagenome associated with high methane production in cattle

(2015) R. John Wallace et al.   BMC GENOMICS

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

(2014) Weibing Shi et al.   GENOME RESEARCH

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Two Different Bacterial Community Types Are Linked with the Low-Methane Emission Trait in Sheep

(2014) Sandra Kittelmann et al.   PLoS One

Reducing GHG emissions through genetic improvement for feed efficiency: effects on economically important traits and enteric methane production

(2013) J. A. Basarab et al.   Animal

Low-methane yield sheep have smaller rumens and shorter rumen retention time

(2013) John P. Goopy et al.   BRITISH JOURNAL OF NUTRITION

SPECIAL TOPICS — Mitigation of methane and nitrous oxide emissions from animal operations: III. A review of animal management mitigation options1

(2013) A. N. Hristov et al.   JOURNAL OF ANIMAL SCIENCE

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Rumen-protected lysine, methionine, and histidine increase milk protein yield in dairy cows fed a metabolizable protein-deficient diet

(2012) C. Lee et al.   JOURNAL OF DAIRY SCIENCE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies

(2011) P. B. Pope et al.   SCIENCE