Transcriptional Responses of the Bacterium Burkholderia terrae BS001 to the Fungal Host Lyophyllum sp. Strain Karsten under Soil-Mimicking Conditions

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

(2015) Nejc Stopnisek et al.   ISME Journal

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genusCollimonas?

(2015) M. B. Rudnick et al.   Environmental Microbiology Reports

De novo assembly of bacterial transcriptomes from RNA-seq data

(2015) Brian Tjaden   GENOME BIOLOGY

Gene Context Analysis Reveals Functional Divergence between Hypothetically Equivalent Enzymes of the Purine–Ureide Pathway

(2014) Vincenzo Puggioni et al.   BIOCHEMISTRY

Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum

(2014) Jean-Claude Pasquet et al.   BMC GENOMICS

Managing oxidative stresses inShewanella oneidensis: intertwined roles of the OxyR and OhrR regulons

(2014) Ning Li et al.   ENVIRONMENTAL MICROBIOLOGY

The Genome of the Fungal-Interactive Soil Bacterium Burkholderia terrae BS001—A Plethora of Outstanding Interactive Capabilities Unveiled

(2014) Irshad Ul Haq et al.   Genome Biology and Evolution

The Cpx Envelope Stress Response Modifies Peptidoglycan Cross-Linking via the l,d-Transpeptidase LdtD and the Novel Protein YgaU

(2014) Margarita Bernal-Cabas et al.   JOURNAL OF BACTERIOLOGY

Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria

(2014) Aurélie Deveau et al.   MICROBIAL ECOLOGY

Burkholderia terrae BS001 migrates proficiently with diverse fungal hosts through soil and provides protection from antifungal agents

(2014) Rashid Nazir et al.   Frontiers in Microbiology

Bacterial SET domain proteins and their role in eukaryotic chromatin modification

(2014) Raúl Alvarez-Venegas   Frontiers in Genetics

Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor

(2013) Laura Navone et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress

(2013) Qinghua Wang et al.   BMC Systems Biology

Reactions of All Escherichia coli Lytic Transglycosylases with Bacterial Cell Wall

(2013) Mijoon Lee et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Computational analysis of bacterial RNA-Seq data

(2013) Ryan McClure et al.   NUCLEIC ACIDS RESEARCH

Expression of a Yersinia pseudotuberculosis Type VI Secretion System Is Responsive to Envelope Stresses through the OmpR Transcriptional Activator

(2013) Erwan Gueguen et al.   PLoS One

Bacterial farming by the fungus Morchella crassipes

(2013) M. Pion et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

In vivogene expression ofPseudomonas putida KT2440 in the rhizosphere of different plants

(2013) Matilde Fernández et al.   Microbial Biotechnology

A type VI secretion system regulated by OmpR inYersinia pseudotuberculosisfunctions to maintain intracellular pH homeostasis

(2012) Weipeng Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Draft Genome Sequence of the Soil Bacterium Burkholderia terrae Strain BS001, Which Interacts with Fungal Surface Structures

(2012) R. Nazir et al.   JOURNAL OF BACTERIOLOGY

Pyrroloquinoline-quinone and its versatile roles in biological processes

(2012) H S Misra et al.   JOURNAL OF BIOSCIENCES

Inhibition of Mushroom Formation and Induction of Glycerol Release—Ecological Strategies of Burkholderia terrae BS001 to Create a Hospitable Niche at the Fungus Lyophyllum sp. Strain Karsten

(2012) Rashid Nazir et al.   MICROBIAL ECOLOGY

Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes

(2012) Min-Sik Kim et al.   MOLECULAR MICROBIOLOGY

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

Transcription Elongation Factor GreA Has Functional Chaperone Activity

(2012) Kun Li et al.   PLoS One

Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription

(2012) Christina Kahramanoglou et al.   Nature Communications

Mechanisms of Resistance to Chloramphenicol in Pseudomonas putida KT2440

(2011) Matilde Fernández et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A eukaryotic-type signalling system of Pseudomonas aeruginosa contributes to oxidative stress resistance, intracellular survival and virulence

(2011) Jana Goldová et al.   BMC GENOMICS

Conservation of Dcm-mediated cytosine DNA methylation in Escherichia coli

(2011) Kevin T. Militello et al.   FEMS MICROBIOLOGY LETTERS

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

(2011) Francesca Mela et al.   ISME Journal

The flexibility of UV-inducible mutation in Deinococcus ficus as evidenced by the existence of the imuB–dnaE2 gene cassette and generation of superior feather degrading bacteria

(2011) You-Hong Zeng et al.   MICROBIOLOGICAL RESEARCH

Peptidoglycan Hydrolases of Escherichia coli

(2011) J. van Heijenoort   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The biochemistry of nitrogen mobilization: purine ring catabolism

(2011) Andrea K. Werner et al.   TRENDS IN PLANT SCIENCE

A Systems Biology Approach Reveals the Role of a Novel Methyltransferase in Response to Chemical Stress and Lipid Homeostasis

(2011) Elena Lissina et al.   PLoS Genetics

Adaptation of Rhizobium leguminosarum to pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

(2011) Vinoy K Ramachandran et al.   GENOME BIOLOGY

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ethanolamine utilization in bacterial pathogens: roles and regulation

(2010) Danielle A. Garsin   NATURE REVIEWS MICROBIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Migratory Response of Soil Bacteria to Lyophyllum sp. Strain Karsten in Soil Microcosms

(2009) J. A. Warmink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Type VI secretion modulates quorum sensing and stress response inVibrio anguillarum

(2009) Barbara Weber et al.   ENVIRONMENTAL MICROBIOLOGY

Towards Gram-negative antivirulence drugs: New inhibitors of HldE kinase

(2008) Nicolas Desroy et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Mutational Analysis of theSinorhizobium melilotiShort-Chain Dehydrogenase/Reductase Family Reveals Substantial Contribution to Symbiosis and Catabolic Diversity

(2008) Asha I. Jacob et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

In vitro reconstitution and crystal structure of p-aminobenzoate N-oxygenase (AurF) involved in aureothin biosynthesis

(2008) Y. S. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lytic transglycosylases: Bacterial space-making autolysins

(2007) Edie Scheurwater et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY