Analysis of the emerging physical network in young mycelia

Hyphal network whole field imaging allows for accurate estimation of anastomosis rates and branching dynamics of the filamentous fungus Podospora anserina

(2020) J. Dikec et al.   Scientific Reports

Fungal feature tracker (FFT): A tool for quantitatively characterizing the morphology and growth of filamentous fungi

(2019) Guillermo Vidal-Diez de Ulzurrun et al.   PLoS Computational Biology

Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures

(2018) Meritxell Riquelme et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Comparing two classes of biological distribution systems using network analysis

(2018) Lia Papadopoulos et al.   PLoS Computational Biology

Modelling three-dimensional fungal growth in response to environmental stimuli

(2017) G. Vidal-Diez de Ulzurrun et al.   JOURNAL OF THEORETICAL BIOLOGY

NEFI: Network Extraction From Images

(2015) M. Dirnberger et al.   Scientific Reports

A bioimage informatics approach to automatically extract complex fungal networks

(2012) Boguslaw Obara et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Analysis of fungal networks

(2012) Luke Heaton et al.   Fungal Biology Reviews

Special issue: Trichoderma - from Basic Biology to Biotechnology

(2011) G. E. Harman et al.   MICROBIOLOGY-SGM

Morphological quantification of filamentous fungal development using membrane immobilization and automatic image analysis

(2009) David J. Barry et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Conidial germination in the filamentous fungus Fusarium graminearum

(2007) Kye-Yong Seong et al.   FUNGAL GENETICS AND BIOLOGY