Development of genomic resources for cattails (Typha), a globally important macrophyte genus

Invasive Species Change Plant Community Composition of Preserved Prairie Pothole Wetlands

(2023) Seth A. Jones et al.   Plants-Basel

Fifteen emerging challenges and opportunities for vegetation science ‐ A horizon scan by early career researchers

(2022) Florencia A. Yannelli et al.   JOURNAL OF VEGETATION SCIENCE

Genome‐scale data resolves the timing of divergence in Joshua trees

(2021) Christopher Irwin Smith et al.   AMERICAN JOURNAL OF BOTANY

Easier than it looks: notes on the taxonomy of Typha L. (Typhaceae) in East Europe

(2021) Polina A. Volkova et al.   AQUATIC BOTANY

Towards linking freshwater plants and ecosystems via functional biogeography

(2021) Lars Lønsmann Iversen et al.   AQUATIC BOTANY

Genome assembly, annotation, and comparative analysis of the cattail Typha latifolia

(2021) Shane D Widanagama et al.   G3-Genes Genomes Genetics

Salinity, not genetic incompatibilities, limits the establishment of the invasive hybrid cattail Typha  ×  glauca in coastal wetlands

(2020) Kathryn Tisshaw et al.   Ecology and Evolution

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

An Ultra High-Density Arabidopsis thaliana Crossover Map That Refines the Influences of Structural Variation and Epigenetic Features

(2019) Beth A. Rowan et al.   GENETICS

The present and future for population genetics, species boundaries, biogeography and conservation

(2019) Michael F Fay et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Marine and Freshwater Plants: Challenges and Expectations

(2019) Eric Maréchal   Frontiers in Plant Science

Introgression of exotic Cervus (nippon and canadensis ) into red deer (Cervus elaphus ) populations in Scotland and the English Lake District

(2018) Stephanie L. Smith et al.   Ecology and Evolution

Asymmetric Hybridization in Cattails (Typha spp.) and Its Implications for the Evolutionary Maintenance of Native Typha latifolia

(2017) Sara J. Pieper et al.   JOURNAL OF HEREDITY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Next-generation biology: Sequencing and data analysis approaches for non-model organisms

(2016) Rute R. da Fonseca et al.   Marine Genomics

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Heterosis in invasive F1 cattail hybrids (Typha × glauca)

(2015) Lisa Zapfe et al.   AQUATIC BOTANY

Hybrid Typha×glauca outperforms native T. latifolia under contrasting water depths in a common garden

(2015) Adèle L. Bunbury-Blanchette et al.   BASIC AND APPLIED ECOLOGY

From promise to practice: pairing non-invasive sampling with genomics in conservation

(2015) Michael A. Russello et al.   PeerJ

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Nowhere to Invade: Rumex crispus and Typha latifolia Projected to Disappear under Future Climate Scenarios

(2013) Zhonglin Xu et al.   PLoS One

Synchronous flowering times and asymmetrical hybridization in Typha latifolia and T. angustifolia in northeastern North America

(2012) Douglas Ball et al.   AQUATIC BOTANY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics

(2011) Shannon C. K. Straub et al.   AMERICAN JOURNAL OF BOTANY

Molecular genetic data reveal hybridization between Typha angustifolia and Typha latifolia across a broad spatial scale in eastern North America

(2011) Heather Kirk et al.   AQUATIC BOTANY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Species-specific SSR alleles for studies of hybrid cattails (Typha latifolia × T. angustifolia ; Typhaceae) in North America

(2010) Allison A. Snow et al.   AMERICAN JOURNAL OF BOTANY

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Macrophytes as habitat for fauna

(2009) H Christie et al.   MARINE ECOLOGY PROGRESS SERIES

Molecular signatures of two cattail species, Typha domingensis and Typha latifolia (Typhaceae), in South Florida

(2008) Xing-Hai Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION