Using sedimentary prokaryotic communities to assess historical changes in the Gippsland Lakes

Reconstructing Paleoflood Occurrence and Magnitude from Lake Sediments

(2022) Bruno Wilhelm et al.   Quaternary

A Case Study for the Recovery of Authentic Microbial Ancient DNA from Soil Samples

(2022) Vilma Pérez et al.   Microorganisms

Magnetostratigraphy and cosmogenic dating of Wonderwerk Cave: New constraints for the chronology of the South African Earlier Stone Age

(2021) Ron Shaar et al.   QUATERNARY SCIENCE REVIEWS

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

(2021) Donovan H Parks et al.   NUCLEIC ACIDS RESEARCH

Early historical forest clearance caused major degradation of water quality at Lake Væng, Denmark

(2021) Ole Bennike et al.   Anthropocene

From Water into Sediment—Tracing Freshwater Cyanobacteria via DNA Analyses

(2021) Ebuka Canisius Nwosu et al.   Microorganisms

Late Holocene climate anomaly concurrent with fire activity and ecosystem shifts in the eastern Australian Highlands

(2021) Zoë A. Thomas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Dust deposition tracks late-Holocene shifts in monsoon activity and the increasing role of human disturbance in the Puna-Altiplano, northwest Argentina

(2020) James Hooper et al.   HOLOCENE

A complete Holocene lake sediment ancient DNA record reveals long-standing high Arctic plant diversity hotspot in northern Svalbard

(2020) Linn H. Voldstad et al.   QUATERNARY SCIENCE REVIEWS

Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens

(2020) Anastasia A. Ivanova et al.   Microorganisms

PIA: More Accurate Taxonomic Assignment of Metagenomic Data Demonstrated on sedaDNA From the North Sea

(2020) Becky Cribdon et al.   Frontiers in Ecology and Evolution

The maturing relationship between Quaternary paleoecology and ancient sedimentary DNA

(2020) Mary E. Edwards   QUATERNARY RESEARCH

Response of Tibetan Plateau lakes to climate change: Trends, patterns, and mechanisms

(2020) Guoqing Zhang et al.   EARTH-SCIENCE REVIEWS

Anthropogenic impact on the historical phytoplankton community of Lake Constance reconstructed by multimarker analysis of sediment‐core environmental DNA

(2020) Anan Ibrahim et al.   MOLECULAR ECOLOGY

Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set

(2020) Tyler J. Murchie et al.   QUATERNARY RESEARCH

Sedimentary ancient DNA metabarcoding delineates the contrastingly temporal change of lake cyanobacterial communities

(2020) Xiaofeng Cao et al.   WATER RESEARCH

Effects of postglacial seawater intrusion on sediment geochemical characteristics in the Romanian sector of the Black Sea

(2020) Livio Ruffine et al.   MARINE AND PETROLEUM GEOLOGY

Holocene evolution of the Ninety Mile Beach sand barrier, Victoria, Australia: The role of sea level, sediment supply and climate.

(2020) David M. Kennedy et al.   MARINE GEOLOGY

Assessing alignment-based taxonomic classification of ancient microbial DNA

(2019) Raphael Eisenhofer et al.   PeerJ

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”

(2019) Samuel M. Luedin et al.   Frontiers in Microbiology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

DNA from lake sediments reveals long-term ecosystem changes after a biological invasion

(2018) Gentile Francesco Ficetola et al.   Science Advances

Actinides AMS on the VEGA accelerator

(2018) M.A.C. Hotchkis et al.   NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS

Refining the palaeoecology of lacustrine testate amoebae: insights from a plant macrofossil record from a eutrophic Scottish lake

(2017) Stephen V. Prentice et al.   JOURNAL OF PALEOLIMNOLOGY

Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus

(2017) Laura S. Weyrich et al.   NATURE

Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia

(2017) Aurèle Vuillemin et al.   Frontiers in Microbiology

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition

(2017) Jacob D. Hosen et al.   Frontiers in Microbiology

Sedimentary DNA Reveals Cyanobacterial Community Diversity over 200 Years in Two Perialpine Lakes

(2016) Marie-Eve Monchamp et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Sublethal salinity stress contributes to habitat limitation in an endangered estuarine fish

(2016) Lisa M. Komoroske et al.   Evolutionary Applications

Strategies to improve reference databases for soil microbiomes

(2016) Jinlyung Choi et al.   ISME Journal

The Gippsland Lakes: management challenges posed by long-term environmental change

(2016) Paul I. Boon et al.   MARINE AND FRESHWATER RESEARCH

Holocene paleoclimate history of Fallen Leaf Lake, CA., from geochemistry and sedimentology of well-dated sediment cores

(2016) Paula J. Noble et al.   QUATERNARY SCIENCE REVIEWS

Sediment cores as archives of historical changes in floodplain lake hydrology

(2016) Anna Lintern et al.   SCIENCE OF THE TOTAL ENVIRONMENT

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Identification of cyanobacterial species with overlapping morphological features by 16S rRNA gene sequencing

(2015) Nitin Keshari et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Habitat and water quality variables as predictors of community composition in an Indonesian coral reef: a multi-taxon study in the Spermonde Archipelago

(2015) Ana Rita Moura Polónia et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

(2015) Lydia H. Zeglin   Frontiers in Microbiology

Using Ancient DNA to Understand Evolutionary and Ecological Processes

(2014) Ludovic Orlando et al.   Annual Review of Ecology Evolution and Systematics

Decreased fitness of restocked hybrid quails prevents fast admixture with wild European quails

(2014) Manel Puigcerver et al.   BIOLOGICAL CONSERVATION

Fifty thousand years of Arctic vegetation and megafaunal diet

(2014) Eske Willerslev et al.   NATURE

Testing the MOD-AGE chronologies of lake sediment sequences dated by the 210Pb method

(2014) Helena Hercman et al.   Quaternary Geochronology

Long livestock farming history and human landscape shaping revealed by lake sediment DNA

(2014) Charline Giguet-Covex et al.   Nature Communications

Bacteria Contribute to Sediment Nutrient Release and Reflect Progressed Eutrophication-Driven Hypoxia in an Organic-Rich Continental Sea

(2013) Hanna Sinkko et al.   PLoS One

Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene

(2013) M. J. L. Coolen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans

(2013) Paul Brotherton et al.   Nature Communications

Elemental (C/N ratios) and isotopic (δ15Norg, δ13Corg) compositions of sedimentary organic matter from a high-altitude mountain lake (Meidsee, 2661 m a.s.l., Switzerland): Implications for Lateglacial and Holocene Alpine landscape evolution

(2012) Florian Thevenon et al.   HOLOCENE

Agricultural land management strategies to reduce phosphorus loads in the Gippsland Lakes, Australia

(2011) Anna M. Roberts et al.   AGRICULTURAL SYSTEMS

Ancient DNA from lake sediments: Bridging the gap between paleoecology and genetics

(2011) Lynn L Anderson-Carpenter et al.   BMC EVOLUTIONARY BIOLOGY

A review of molecular organic proxies for examining modern and ancient lacustrine environments

(2011) Isla S. Castañeda et al.   QUATERNARY SCIENCE REVIEWS

Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes

(2009) Yukiyo Fukunaga et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Past occurrences of hypoxia in the Baltic Sea and the role of climate variability, environmental change and human impact

(2008) Lovisa Zillén et al.   EARTH-SCIENCE REVIEWS

High sensitivity analysis of plutonium isotopes in environmental samples using accelerator mass spectrometry (AMS)

(2008) D. P. Child et al.   JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY