First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023

Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission

(2022) Smruthi Karthikeyan et al.   NATURE

A RT-qPCR system using a degenerate probe for specific identification and differentiation of SARS-CoV-2 Omicron (B.1.1.529) variants of concern

(2022) Randi Jessen et al.   PLoS One

Household transmission of SARS-CoV-2 Omicron variant of concern subvariants BA.1 and BA.2 in Denmark

(2022) Frederik Plesner Lyngse et al.   Nature Communications

A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research

(2021) Suzannah J. Rihn et al.   PLOS BIOLOGY

Electronic reporting of diagnostic laboratory test results from all health care sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark

(2021) K Schønning et al.   APMIS

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION