Article
Biology
Satyaprakash Pandey, Mona Hajikazemi, Theresa Zacheja, Stephanie Schalbetter, Jonathan Baxter, Victor Guryev, Andreas Hofmann, Dieter W. Heermann, Stefan A. Juranek, Katrin Paeschke
Summary: The study found that the catalytic subunit of telomerase (Est2) in budding yeast binds to multiple guanine-rich genomic loci, known as non-telomeric binding sites (NTBS). Est2 binds to NTBS in G1 and G2 phase independently of Est1 and Est3. The absence of Est1 and Est3 renders telomerase inactive at NTBS.
Article
Cell Biology
Charlotte Hodson, Sylvie van Twest, Malgorzata Dylewska, Julienne J. O'Rourke, Winnie Tan, Vincent J. Murphy, Mannu Walia, Lara Abbouche, Jadwiga Nieminuszczy, Elyse Dunn, Rohan Bythell-Douglas, Jorg Heierhorst, Wojciech Niedzwiedz, Andrew J. Deans
Summary: R loops, stable DNA:RNA hybrids that arise from stalled RNA polymerase, can cause genome instability. Branchpoint translocases like FANCM can displace R loops in cells, particularly in regions prone to R-loops. These enzymes are more effective than helicases in resolving R loops, and their depletion can have additive effects on R-loop accumulation and DNA damage in human cells.
Review
Oncology
Jonathan J. Morgan, Lisa J. Crawford
Summary: This article examines the importance of genomic stability in tumour development and the role of ubiquitination in maintaining genome integrity. Faithful DNA replication during cell division is crucial for genome stability, and dysregulation of the UPS may contribute to cancer progression.
Article
Biochemistry & Molecular Biology
Joan Frigola, Radhakrishnan Sabarinathan, Abel Gonzalez-Perez, Nuria Lopez-Bigas
Summary: An abnormally high rate of UV-light related mutations is observed at transcription factor binding sites (TFBS) across melanomas, with certain TFs impairing the repair of UV-induced lesions and increasing the rate of lesion generation at their binding sites. Through nucleotide-resolution data, it is found that mutation rate increase in TFBS is mainly due to decreased repair efficiency, rather than the rate of lesion formation.
NUCLEIC ACIDS RESEARCH
(2021)
Article
Pharmacology & Pharmacy
Geng Wang, Hongmin Guo, Yan Ren, Weiyi Chen, Yixuan Wang, Jianing Li, Hua Liu, Jingjun Xing, Yanru Zhang, Na Li
Summary: This study investigates the effects and mechanisms of triptolide (TPL) and carboplatin (CBP) in treating melanoma. The results demonstrate that the combination of TPL and CBP can selectively inhibit NER pathway activity and synergistically inhibit the viability, migration, invasion, and induce apoptosis of melanoma cells. Additionally, combined treatment with TPL and CBP can significantly suppress tumor progression in nude mice by inhibiting cell proliferation and inducing apoptosis.
FRONTIERS IN PHARMACOLOGY
(2023)
Review
Biochemistry & Molecular Biology
Sudong Zhan, Jolene Siu, Zhanwei Wang, Herbert Yu, Tedros Bezabeh, Youping Deng, Wei Du, Peiwen Fei
Summary: Fanconi Anemia (FA) is a genetic disease with the largest number of health complications in human organ systems, highlighting the important roles played by FA genes in maintaining human health. The FA signaling network, comprised of FA proteins and other non-FA proteins, is crucial for easing cellular stresses and protecting humans from diseases such as aging and cancer, with the FA D2 group protein (FANCD2) serving as the focal point of FA signaling.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Chao Dong, Liwei An, Cheng-han Yu, Michael S. Y. Huen
Summary: The DYRK1B kinase plays a crucial role in maintaining rDNA stability, nucleolar reorganization, and inhibition of rRNA synthesis. Inhibition of DYRK1B results in sustained nucleolar transcription, hypersensitivity to DSBs at rDNA arrays, and requirement for DSB repair and rDNA copy number maintenance. These findings highlight the importance of DYRK1B as a key signaling intermediate in coordinating DSB repair and rDNA transcriptional activities within the nucleolus.
NUCLEIC ACIDS RESEARCH
(2021)
Article
Biochemistry & Molecular Biology
Zhihui Liu, Michael J. Kruhlak, Carol J. Thiele
Summary: Zinc finger transcription factor CASZ1b is essential for nervous system development and suppresses neuroblastoma growth. Our study investigates the recruitment of CASZ1b to sites of DNA damage, showing that CASZ1b is transiently recruited to these sites and that its recruitment is dependent on PARP and specific DNA binding motifs. Loss of CASZ1b increases cell sensitivity to DNA damage induced by gamma irradiation and suggests a role for CASZ1b in regulating DNA repair efficiency during development and tumorigenesis.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2023)
Article
Plant Sciences
Yu Wang, Jinzheng Wang, Qiang Lv, Yi-Kun He
Summary: The study reveals an interplay between formaldehyde and UV-B radiation in plants, exacerbating genome instability, leading to severe DNA damage and impaired growth and development. ADH2/GSNOR1 plays a key role in combating these effects.
PLANT CELL AND ENVIRONMENT
(2022)
Review
Biochemistry & Molecular Biology
Alba Muniesa-Vargas, Arjan F. Theil, Cristina Ribeiro-Silva, Wim Vermeulen, Hannes Lans
Summary: The XPG/ERCC5 endonuclease is the causative gene for Xeroderma Pigmentosum complementation group G. It plays a critical role in removing DNA damage in nucleotide excision repair and has additional important functions in genome maintenance, such as protecting replication forks and resolving R-loops. XPG deficiency is associated with various disease phenotypes.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2022)
Article
Biochemistry & Molecular Biology
Timothy J. Durham, Riza M. Daza, Louis Gevirtzman, Darren A. Cusanovich, Olubusayo Bolonduro, William Stafford Noble, Jay Shendure, Robert H. Waterston
Summary: Recent developments in single-cell technologies have allowed researchers to study cell states in Caenorhabditis elegans at a higher resolution, including gene expression patterns and chromatin accessibility. A novel implementation of the latent Dirichlet allocation algorithm has identified 37 clusters of cells corresponding to different cell types in the worm, providing new insights into cellular differentiation and gene regulation.
Review
Medicine, Research & Experimental
Shihui Guo, Xiao Zhu, Ziyuan Huang, Chuzhong Wei, Jiaao Yu, Lin Zhang, Jinghua Feng, Mingdong Li, Zesong Li
Summary: Genetic instability can be caused by external factors and is related to intracellular damage. Research has shown the connection between genomic stability and tumors, which is a crucial factor in tumor treatment. The mechanisms of genomic stability and tumorigenesis development are complex, but researchers have been making progress in these areas. This review introduces various aspects related to genomic stability, tumor development drivers, characteristics of tumor cells, tumor metastasis, and tumor treatment. Immunotherapy plays a significant role in tumor treatment as it can effectively inhibit tumor spread and eliminate tumor cells. Advances in tumorigenesis development studies and discoveries in tumor metastasis provide new therapeutic techniques that can prevent tumor spread and improve the cure rate of tumors.
BIOMEDICINE & PHARMACOTHERAPY
(2023)
Review
Biochemistry & Molecular Biology
Thanyalak Kraithong, Silas Hartley, David Jeruzalmi, Danaya Pakotiprapha
Summary: The double stranded DNA, the repository of genetic information in bacteria, archaea and eukaryotes, shows unexpected instability in the intracellular environment and is further exacerbated by exogenous agents. Cells have evolved at least six distinct DNA repair pathways to protect themselves from severe consequences of DNA damage. Bacterial nucleotide excision repair pathway operates in two modes: a global genome repair pathway and a transcription-coupled repair pathway.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Multidisciplinary Sciences
Cuijuan Han, Alireza Khodadadi-Jamayran, Adam H. Lorch, Qi Jin, Valentina Serafin, Ping Zhu, Yuliya Politanska, Limin Sun, Blanca T. Gutierrez-Diaz, Marina Pryzhkova, Hiam Abdala-Valencia, Elizabeth Thomas Bartom, Barbara Buldini, Giuseppe Basso, Sadanandan E. Velu, Kavitha Sarma, Basil B. Mattamana, Byoung-Kyu Cho, Rebecca C. Obeng, Young Ah Goo, Philip W. Jordan, Aristotelis Tsirigos, Yalu Zhou, Panagiotis Ntziachristos
Summary: The inhibition of SF3B1 blocks the growth of T-cell acute lymphoblastic leukemia without notable toxicity. It stabilizes the U2 complex component SF3B1 through protein deubiquitination. Furthermore, SF3B1 inhibition disrupts exon skipping, leading to nonsense-mediated decay and diminished levels of DNA damage response-related transcripts. In addition, SF3B1 inhibition decreases R-loop formation. Clinically used SF3B1 inhibitors synergize with CHEK2 inhibitors and chemotherapeutic drugs to block leukemia growth.
Article
Biology
Marco Saponaro
Summary: Transcription and replication are essential processes in cells, but they can conflict with each other. Transcription can impair replication, but cells seem to accept this possibility. Coordinating these processes in eukaryotes is complex, and there may be specific hotspots where conflicts occur.