OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow
出版年份 2023 全文链接
标题
OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume 24, Issue 6, Pages -
出版商
Oxford University Press (OUP)
发表日期
2023-10-14
DOI
10.1093/bib/bbad365
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Deep learning for reconstructing protein structures from cryo-EM density maps: Recent advances and future directions
- (2023) Nabin Giri et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- OPUS-Mut: Studying the Effect of Protein Mutation through Side-Chain Modeling
- (2023) Gang Xu et al. Journal of Chemical Theory and Computation
- Studying protein–protein interaction through side-chain modeling method OPUS-Mut
- (2022) Gang Xu et al. BRIEFINGS IN BIOINFORMATICS
- OPUS-X: An Open-Source Toolkit for Protein Torsion Angles, Secondary Structure, Solvent Accessibility, Contact Map Predictions, and 3D Folding
- (2021) Gang Xu et al. BIOINFORMATICS
- pyconsFold: a fast and easy tool for modeling and docking using distance predictions
- (2021) J Lamb et al. BIOINFORMATICS
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- Improved protein structure prediction using predicted interresidue orientations
- (2020) Jianyi Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling
- (2020) Gang Xu et al. Journal of Chemical Theory and Computation
- OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods
- (2020) Gang Xu et al. Journal of Chemical Information and Modeling
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
- (2019) Dorothee Liebschner et al. Acta Crystallographica Section D-Structural Biology
- EvoEF2: accurate and fast energy function for computational protein design
- (2019) Xiaoqiang Huang et al. BIOINFORMATICS
- Assessment of structural features in Cryo-EM density maps using SSE and side chain Z-scores
- (2018) Grigore Pintilie et al. JOURNAL OF STRUCTURAL BIOLOGY
- Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12
- (2017) Jürgen Haas et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
- (2017) Sheng Wang et al. PLoS Computational Biology
- CONFOLD: Residue-residue contact-guidedab initioprotein folding
- (2015) Badri Adhikari et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps
- (2012) Steffen Lindert et al. STRUCTURE
- PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
- (2010) S. Chaudhury et al. BIOINFORMATICS
- Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
- (2002) Hongyi Zhou et al. PROTEIN SCIENCE
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started