AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
出版年份 2023 全文链接
标题
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
作者
关键词
-
出版物
Communications Biology
Volume 6, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2023-02-08
DOI
10.1038/s42003-023-04488-9
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models
- (2023) Vamsi Nallapareddy et al. BIOINFORMATICS
- Using deep learning to annotate the protein universe
- (2022) Maxwell L. Bileschi et al. NATURE BIOTECHNOLOGY
- Method of the Year: protein structure prediction
- (2022) Vivien Marx NATURE METHODS
- The impact of AlphaFold2 one year on
- (2022) David T. Jones et al. NATURE METHODS
- Mitoribosomal small subunit maturation involves formation of initiation-like complexes
- (2022) Tea Lenarčič et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The structural coverage of the human proteome before and after AlphaFold
- (2022) Eduard Porta-Pardo et al. PLoS Computational Biology
- Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
- (2022) Neeladri Sen et al. BRIEFINGS IN BIOINFORMATICS
- Clustering FunFams using sequence embeddings improves EC purity
- (2021) Maria Littmann et al. BIOINFORMATICS
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- Critical Assessment of Methods of Protein Structure Prediction ( CASP ) – Round XIV
- (2021) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Accurate prediction of protein structures and interactions using a three-track neural network
- (2021) Minkyung Baek et al. SCIENCE
- AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
- (2021) Mihaly Varadi et al. NUCLEIC ACIDS RESEARCH
- SCOPe: improvements to the structural classification of proteins – extended database to facilitate variant interpretation and machine learning
- (2021) John-Marc Chandonia et al. NUCLEIC ACIDS RESEARCH
- The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
- (2020) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- CATH: increased structural coverage of functional space
- (2020) Ian Sillitoe et al. NUCLEIC ACIDS RESEARCH
- Assembling multidomain protein structures through analogous global structural alignments
- (2019) Xiaogen Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Distance-based protein folding powered by deep learning
- (2019) Jinbo Xu PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery
- (2019) Martin Saurer et al. SCIENCE
- Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints
- (2019) Joe G. Greener et al. Nature Communications
- cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly
- (2018) T E Lewis et al. BIOINFORMATICS
- ConDo: protein domain boundary prediction using coevolutionary information
- (2018) Seung Hwan Hong et al. BIOINFORMATICS
- Gene3D: Extensive prediction of globular domains in proteins
- (2017) Tony E Lewis et al. NUCLEIC ACIDS RESEARCH
- An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences
- (2017) Su Datt Lam et al. Acta Crystallographica Section D-Structural Biology
- Functional classification of CATH superfamilies: a domain-based approach for protein function annotation
- (2015) Sayoni Das et al. BIOINFORMATICS
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative
- (2014) K. Khafizov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ECOD: An Evolutionary Classification of Protein Domains
- (2014) Hua Cheng et al. PLoS Computational Biology
- Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
- (2013) Jonathan G. Lees et al. NUCLEIC ACIDS RESEARCH
- SCOP2 prototype: a new approach to protein structure mining
- (2013) Antonina Andreeva et al. NUCLEIC ACIDS RESEARCH
- Protein structure prediction from sequence variation
- (2012) Debora S Marks et al. NATURE BIOTECHNOLOGY
- New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
- (2012) Ian Sillitoe et al. NUCLEIC ACIDS RESEARCH
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Gene3D: merging structure and function for a Thousand genomes
- (2009) Jonathan Lees et al. NUCLEIC ACIDS RESEARCH
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