Integrated transcriptomics and metabolomics analysis provide insight into anthocyanin biosynthesis for sepal color formation in Heptacodium miconioides

Automatic identification and annotation of MYB gene family members in plants

(2022) Boas Pucker   BMC GENOMICS

Regulation mechanisms of flavonoids biosynthesis of Hancheng Dahongpao peels (Zanthoxylum bungeanum Maxim) at different development stages by integrated metabolomics and transcriptomics analysis

(2022) Tao Zheng et al.   BMC PLANT BIOLOGY

Leaf anatomy, photosynthesis, and chloroplast ultrastructure of Heptacodium miconioides seedlings reveal adaptation to light environment

(2022) Yanfei Zhang et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Transcriptomic and Metabolomic Analysis of Quality Changes during Sweet Cherry Fruit Development and Mining of Related Genes

(2022) Chaoqun Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of anthocyanins and proanthocyanidins biosynthesis in Trifolium repens

(2022) Sainan Ma et al.   INDUSTRIAL CROPS AND PRODUCTS

The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula

(2021) Jogindra Naik et al.   PLANT MOLECULAR BIOLOGY

Nighttime Temperatures and Sunlight Intensities Interact to Influence Anthocyanin Biosynthesis and Photooxidative Sunburn in “Fuji” Apple

(2021) Xiaomin Xue et al.   Frontiers in Plant Science

The red flower wintersweet genome provides insights into the evolution of magnoliids and the molecular mechanism for tepal color development

(2021) Zhiguo Shen et al.   PLANT JOURNAL

Integrating full-length transcriptomics and metabolomics reveals the regulatory mechanisms underlying yellow pigmentation in tree peony (Paeonia suffruticosa Andr.) flowers

(2021) Xiaoning Luo et al.   Horticulture Research

Combined Analysis of the Metabolome and Transcriptome Identified Candidate Genes Involved in Phenolic Acid Biosynthesis in the Leaves of Cyclocarya paliurus

(2020) Weida Lin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ultraviolet B-induced MdWRKY72 expression promotes anthocyanin synthesis in apple

(2020) Jiafei Hu et al.   PLANT SCIENCE

Anthocyanin Induction by Drought Stress in the Calyx of Roselle Cultivars

(2020) Jeny Hinojosa-Gómez et al.   MOLECULES

PyWRKY26 and PybHLH3 cotargeted the PyMYB114 promoter to regulate anthocyanin biosynthesis and transport in red-skinned pears

(2020) Chuang Li et al.   Horticulture Research

MYB44 competitively inhibits the formation of the MYB340-bHLH2-NAC56 complex to regulate anthocyanin biosynthesis in purple-fleshed sweet potato

(2020) Zeng-Zheng Wei et al.   BMC PLANT BIOLOGY

Comparative Transcriptomic Analysis of the Development of Sepal Morphology in Tomato (Solanum Lycopersicum L.)

(2020) Jingyi Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Automatic Identification of Players in the Flavonoid Biosynthesis with Application on the Biomedicinal Plant Croton tiglium

(2020) Boas Pucker et al.   Plants-Basel

Metabolomic and transcriptomic analyses of mutant yellow leaves provide insights into pigment synthesis and metabolism in Ginkgo biloba

(2020) Yaqiong Wu et al.   BMC GENOMICS

Single‐cell analysis clarifies mosaic color development in purple hydrangea sepal

(2020) Kumi Yoshida et al.   NEW PHYTOLOGIST

A MYB / bHLH complex regulates tissue‐specific anthocyanin biosynthesis in the inner pericarp of red‐centered kiwifruit Actinidia chinensis cv. Hongyang

(2019) Lihuan Wang et al.   PLANT JOURNAL

Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea (Camellia sinensis)

(2019) Dylan Rothenberg et al.   MOLECULES

Floral organ- and temperature-dependent regulation of anthocyanin biosynthesis in Cymbidium hybrid flowers

(2019) Takashi Nakatsuka et al.   PLANT SCIENCE

A non-LTR retrotransposon activates anthocyanin biosynthesis by regulating a MYB transcription factor in Capsicum annuum

(2019) Soyoung Jung et al.   PLANT SCIENCE

Apple NAC transcription factor MdNAC52 regulates biosynthesis of anthocyanin and proanthocyanidin through MdMYB9 and MdMYB11

(2019) Qingguo Sun et al.   PLANT SCIENCE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Anthocyanins Accumulation and Molecular Analysis of Correlated Genes by Metabolome and Transcriptome in Green and Purple Asparaguses ( Asparagus Officinalis , L.)

(2018) Tingting Dong et al.   FOOD CHEMISTRY

The bZip transcription factor HY5 mediates CRY1a -induced anthocyanin biosynthesis in tomato

(2018) Chao-Chao Liu et al.   PLANT CELL AND ENVIRONMENT

The ethylene response factor MdERF1B regulates anthocyanin and proanthocyanidin biosynthesis in apple

(2018) Jing Zhang et al.   PLANT MOLECULAR BIOLOGY

Transcriptomic analysis of flower development in tea ( Camellia sinensis (L.))

(2017) Feng Liu et al.   GENE

Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis

(2017) Sunil Kanti Mondal et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana

(2017) Yue Lou et al.   NEW PHYTOLOGIST

ThNAC13, a NAC Transcription Factor from Tamarix hispida, Confers Salt and Osmotic Stress Tolerance to Transgenic Tamarix and Arabidopsis

(2017) Liuqiang Wang et al.   Frontiers in Plant Science

The bZIP transcription factor MdHY5 regulates anthocyanin accumulation and nitrate assimilation in apple

(2017) Jian-Ping An et al.   Horticulture Research

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

The transcription factors MS188 and AMS form a complex to activate the expression ofCYP703A2for sporopollenin biosynthesis inArabidopsis thaliana

(2016) Shuang-Xi Xiong et al.   PLANT JOURNAL

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Phenotype and transcriptome analysis reveals chloroplast development and pigment biosynthesis together influenced the leaf color formation in mutants of Anthurium andraeanum ‘Sonate’

(2015) Yuxia Yang et al.   Frontiers in Plant Science

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Flower color diversity revealed by differential expression of flavonoid biosynthetic genes and flavonoid accumulation in herbaceous peony (Paeonia lactiflora Pall.)

(2012) Daqiu Zhao et al.   MOLECULAR BIOLOGY REPORTS

Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria × ananassa) fruits

(2012) Jan G. Schaart et al.   NEW PHYTOLOGIST

Coloring genetically modified soybean grains with anthocyanins by suppression of the proanthocyanidin genes ANR1 and ANR2

(2011) Nik Kovinich et al.   TRANSGENIC RESEARCH

Genome-Wide Classification and Evolutionary Analysis of the bHLH Family of Transcription Factors in Arabidopsis, Poplar, Rice, Moss, and Algae

(2010) L. Carretero-Paulet et al.   PLANT PHYSIOLOGY

Anthocyanins: Natural Colorants with Health-Promoting Properties

(2010) Jian He et al.   Annual Review of Food Science and Technology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

La production du bissap (Hibiscus sabdariffaL.) au Sénégal

(2009) Mady Cisse et al.   Fruits

DkMyb4 Is a Myb Transcription Factor Involved in Proanthocyanidin Biosynthesis in Persimmon Fruit

(2009) T. Akagi et al.   PLANT PHYSIOLOGY

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

(2008) Yoshikazu Tanaka et al.   PLANT JOURNAL