标题
Open-source tools for behavioral video analysis: Setup, methods, and best practices
作者
关键词
-
出版物
eLife
Volume 12, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2023-03-22
DOI
10.7554/elife.79305
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- MC-Calib: A generic and robust calibration toolbox for multi-camera systems
- (2022) Francois Rameau et al. COMPUTER VISION AND IMAGE UNDERSTANDING
- SLEAP: A deep learning system for multi-animal pose tracking
- (2022) Talmo D. Pereira et al. NATURE METHODS
- Identifying behavioral structure from deep variational embeddings of animal motion
- (2022) Kevin Luxem et al. Communications Biology
- A rapid whisker-based decision underlying skilled locomotion in mice
- (2021) Richard A Warren et al. eLife
- TRex, a fast multi-animal tracking system with markerless identification, and 2D estimation of posture and visual fields
- (2021) Tristan Walter et al. eLife
- DeepLabStream enables closed-loop behavioral experiments using deep learning-based markerless, real-time posture detection
- (2021) Jens F. Schweihoff et al. Communications Biology
- Geometric deep learning enables 3D kinematic profiling across species and environments
- (2021) Timothy W. Dunn et al. NATURE METHODS
- A review of 28 free animal-tracking software applications: current features and limitations
- (2021) Veronica Panadeiro et al. LAB ANIMAL
- LiftPose3D, a deep learning-based approach for transforming two-dimensional to three-dimensional poses in laboratory animals
- (2021) Adam Gosztolai et al. NATURE METHODS
- B-SOiD, an open-source unsupervised algorithm for identification and fast prediction of behaviors
- (2021) Alexander I. Hsu et al. Nature Communications
- Scanned optogenetic control of mammalian somatosensory input to map input-specific behavioral outputs
- (2021) Ara Schorscher-Petcu et al. eLife
- Automated pose estimation in primates
- (2021) Benjamin Y. Hayden et al. AMERICAN JOURNAL OF PRIMATOLOGY
- Datasheets for datasets
- (2021) Timnit Gebru et al. COMMUNICATIONS OF THE ACM
- A review of uncertainty quantification in deep learning: Techniques, applications and challenges
- (2021) Moloud Abdar et al. Information Fusion
- Multisensory coding of angular head velocity in the retrosplenial cortex
- (2021) Sepiedeh Keshavarzi et al. NEURON
- The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice
- (2021) Cristina Segalin et al. eLife
- A quantitative reward prediction error signal in the ventral pallidum
- (2020) David J. Ottenheimer et al. NATURE NEUROSCIENCE
- A Neural Network for Wind-Guided Compass Navigation
- (2020) Tatsuo S. Okubo et al. NEURON
- Deep learning-based behavioral analysis reaches human accuracy and is capable of outperforming commercial solutions
- (2020) Oliver Sturman et al. NEUROPSYCHOPHARMACOLOGY
- Revealing the structure of pharmacobehavioral space through motion sequencing
- (2020) Alexander B. Wiltschko et al. NATURE NEUROSCIENCE
- Automated markerless pose estimation in freely moving macaques with OpenMonkeyStudio
- (2020) Praneet C. Bala et al. Nature Communications
- Real-time, low-latency closed-loop feedback using markerless posture tracking
- (2020) Gary A Kane et al. eLife
- Adaptive, locally linear models of complex dynamics
- (2019) Antonio C. Costa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spontaneous behaviors drive multidimensional, brainwide activity
- (2019) Carsen Stringer et al. SCIENCE
- Single-trial neural dynamics are dominated by richly varied movements
- (2019) Simon Musall et al. NATURE NEUROSCIENCE
- DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning
- (2019) Jacob M Graving et al. eLife
- DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila
- (2019) Semih Günel et al. eLife
- ezTrack: An open-source video analysis pipeline for the investigation of animal behavior
- (2019) Zachary T. Pennington et al. Scientific Reports
- Measuring behavior across scales
- (2018) Gordon J. Berman BMC BIOLOGY
- The Striatum Organizes 3D Behavior via Moment-to-Moment Action Selection
- (2018) Jeffrey E. Markowitz et al. CELL
- DeepLabCut: markerless pose estimation of user-defined body parts with deep learning
- (2018) Alexander Mathis et al. NATURE NEUROSCIENCE
- Fast animal pose estimation using deep neural networks
- (2018) Talmo D. Pereira et al. NATURE METHODS
- Neuroscience Needs Behavior: Correcting a Reductionist Bias
- (2017) John W. Krakauer et al. NEURON
- Vicarious trial and error
- (2016) A. David Redish NATURE REVIEWS NEUROSCIENCE
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- ImageNet Large Scale Visual Recognition Challenge
- (2015) Olga Russakovsky et al. INTERNATIONAL JOURNAL OF COMPUTER VISION
- Bonsai: an event-based framework for processing and controlling data streams
- (2015) Gonçalo Lopes et al. Frontiers in Neuroinformatics
- BEEtag: A Low-Cost, Image-Based Tracking System for the Study of Animal Behavior and Locomotion
- (2015) James D. Crall et al. PLoS One
- Mapping the stereotyped behaviour of freely moving fruit flies
- (2014) G. J. Berman et al. Journal of the Royal Society Interface
- Toward a Science of Computational Ethology
- (2014) David J. Anderson et al. NEURON
- Automated multi-day tracking of marked mice for the analysis of social behaviour
- (2013) Shay Ohayon et al. JOURNAL OF NEUROSCIENCE METHODS
- Anterior cingulate neurons in the rat map anticipated effort and reward to their associated action sequences
- (2012) Stephen L. Cowen et al. JOURNAL OF NEUROPHYSIOLOGY
- JAABA: interactive machine learning for automatic annotation of animal behavior
- (2012) Mayank Kabra et al. NATURE METHODS
- Beyond the Reward Pathway: Coding Reward Magnitude and Error in the Rat Subthalamic Nucleus
- (2009) Sylvie Lardeux et al. JOURNAL OF NEUROPHYSIOLOGY
- Single-Cell and Population Coding of Expected Reward Probability in the Orbitofrontal Cortex of the Rat
- (2009) E. van Duuren et al. JOURNAL OF NEUROSCIENCE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started