The connectome of an insect brain

Synaptic counts approximate synaptic contact area in Drosophila

(2022) Christopher L. Barnes et al.   PLoS One

Lateral axonal modulation is required for stimulus-specific olfactory conditioning in Drosophila

(2022) Julia E. Manoim et al.   CURRENT BIOLOGY

A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages

(2022) Marc Corrales et al.   Neural Development

Targeted photostimulation uncovers circuit motifs supporting short-term memory

(2021) Kayvon Daie et al.   NATURE NEUROSCIENCE

Statistical Connectomics

(2021) Jaewon Chung et al.   Annual Review of Statistics and Its Application

Frozen algorithms: how the brain's wiring facilitates learning

(2021) Dhruva V Raman et al.   CURRENT OPINION IN NEUROBIOLOGY

Connectomes across development reveal principles of brain maturation

(2021) Daniel Witvliet et al.   NATURE

Recurrent dynamics in the cerebral cortex: Integration of sensory evidence with stored knowledge

(2021) Wolf Singer   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Information flow, cell types and stereotypy in a full olfactory connectome

(2021) Philipp Schlegel et al.   eLife

Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila

(2021) Sebastian Hückesfeld et al.   eLife

Synchronous and opponent thermosensors use flexible cross-inhibition to orchestrate thermal homeostasis

(2021) Luis Hernandez-Nunez et al.   Science Advances

A neuropeptidergic circuit gates selective escape behavior of Drosophila larvae

(2021) Bibi Nusreen Imambocus et al.   CURRENT BIOLOGY

Context-dependent representations of movement in Drosophila dopaminergic reinforcement pathways

(2021) Aryeh Zolin et al.   NATURE NEUROSCIENCE

Circuits for integrating learned and innate valences in the insect brain

(2021) Claire Eschbach et al.   eLife

Switch-like and persistent memory formation in individual Drosophila larvae

(2021) Amanda Lesar et al.   eLife

A connectome of the Drosophila central complex reveals network motifs suitable for flexible navigation and context-dependent action selection

(2021) Brad K Hulse et al.   eLife

SciPy 1.0: fundamental algorithms for scientific computing in Python

(2020) Pauli Virtanen et al.   NATURE METHODS

Whitening of odor representations by the wiring diagram of the olfactory bulb

(2020) Adrian A. Wanner et al.   NATURE NEUROSCIENCE

Identifying neural substrates of competitive interactions and sequence transitions during mechanosensory responses in Drosophila

(2020) Jean-Baptiste Masson et al.   PLoS Genetics

Recurrent architecture for adaptive regulation of learning in the insect brain

(2020) Claire Eschbach et al.   NATURE NEUROSCIENCE

An Individual Interneuron Participates in Many Kinds of Inhibition and Innervates Much of the Mouse Visual Thalamus

(2020) Josh L. Morgan et al.   NEURON

Vertex nomination via seeded graph matching

(2020) Heather G. Patsolic et al.   Statistical Analysis and Data Mining

Complete Connectomic Reconstruction of Olfactory Projection Neurons in the Fly Brain

(2020) Alexander S. Bates et al.   CURRENT BIOLOGY

Hierarchical community detection by recursive partitioning

(2020) Tianxi Li et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Array programming with NumPy

(2020) Charles R. Harris et al.   NATURE

Recurrent neural networks can explain flexible trading of speed and accuracy in biological vision

(2020) Courtney J. Spoerer et al.   PLoS Computational Biology

A connectome and analysis of the adult Drosophila central brain

(2020) Louis K Scheffer et al.   eLife

BRICseq Bridges Brain-wide Interregional Connectivity to Neural Activity and Gene Expression in Single Animals

(2020) Longwen Huang et al.   CELL

Useful road maps: studying Drosophila larva’s central nervous system with the help of connectomics

(2020) Claire Eschbach et al.   CURRENT OPINION IN NEUROBIOLOGY

Going in circles is the way forward: the role of recurrence in visual inference

(2020) Ruben S van Bergen et al.   CURRENT OPINION IN NEUROBIOLOGY

Axo‐axonic synapses: Diversity in neural circuit function

(2020) Kara K. Cover et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila

(2020) Javier Valdes-Aleman et al.   NEURON

Developmentally Arrested Precursors of Pontine Neurons Establish an Embryonic Blueprint of the Drosophila Central Complex

(2019) Ingrid V. Andrade et al.   CURRENT BIOLOGY

Evidence that recurrent circuits are critical to the ventral stream’s execution of core object recognition behavior

(2019) Kohitij Kar et al.   NATURE NEUROSCIENCE

Chronology-based architecture of descending circuits that underlie the development of locomotor repertoire after birth

(2019) Avinash Pujala et al.   eLife

Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics

(2019) Alexander Shakeel Bates et al.   CURRENT OPINION IN NEUROBIOLOGY

Reward signaling in a recurrent circuit of dopaminergic neurons and peptidergic Kenyon cells

(2019) Radostina Lyutova et al.   Nature Communications

Neural circuits for evidence accumulation and decision making in larval zebrafish

(2019) Armin Bahl et al.   NATURE NEUROSCIENCE

A multilayer circuit architecture for the generation of distinct locomotor behaviors in Drosophila

(2019) Aref Arzan Zarin et al.   eLife

Progress and remaining challenges in high-throughput volume electron microscopy

(2018) Jörgen Kornfeld et al.   CURRENT OPINION IN NEUROBIOLOGY

Do the right thing: neural network mechanisms of memory formation, expression and update in Drosophila

(2018) Paola Cognigni et al.   CURRENT OPINION IN NEUROBIOLOGY

Diversity of internal sensory neuron axon projection patterns is controlled by the POU-domain protein Pdm3 inDrosophilalarvae

(2018) Cheng Sam Qian et al.   JOURNAL OF NEUROSCIENCE

Nociceptive interneurons control modular motor pathways to promote escape behavior in Drosophila

(2018) Anita Burgos et al.   eLife

Recording Neural Activity in Unrestrained Animals with Three-Dimensional Tracking Two-Photon Microscopy

(2018) Doycho Karagyozov et al.   Cell Reports

Sensorimotor pathway controlling stopping behavior during chemotaxis in the Drosophila melanogaster larva

(2018) Ibrahim Tastekin et al.   eLife

Convergence of monosynaptic and polysynaptic sensory paths onto common motor outputs in a Drosophila feeding connectome

(2018) Anton Miroschnikow et al.   eLife

Seeded graph matching

(2018) Donniell E. Fishkind et al.   PATTERN RECOGNITION

The Ol1mpiad: concordance of behavioural faculties of stage 1 and stage 3Drosophilalarvae

(2017) Maria J. Almeida-Carvalho et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The complete connectome of a learning and memory centre in an insect brain

(2017) Katharina Eichler et al.   NATURE

Reciprocal synapses between mushroom body and dopamine neurons form a positive feedback loop required for learning

(2017) Isaac Cervantes-Sandoval et al.   eLife

Conserved neural circuit structure across Drosophila larval development revealed by comparative connectomics

(2017) Stephan Gerhard et al.   eLife

Competitive Disinhibition Mediates Behavioral Choice and Sequences in Drosophila

(2016) Tihana Jovanic et al.   CELL

Why neurons mix: high dimensionality for higher cognition

(2016) Stefano Fusi et al.   CURRENT OPINION IN NEUROBIOLOGY

NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases

(2016) Marta Costa et al.   NEURON

Selective Inhibition Mediates the Sequential Recruitment of Motor Pools

(2016) Maarten F. Zwart et al.   NEURON

The wiring diagram of a glomerular olfactory system

(2016) Matthew E Berck et al.   eLife

A circuit mechanism for the propagation of waves of muscle contraction in Drosophila

(2016) Akira Fushiki et al.   eLife

Quantitative neuroanatomy for connectomics in Drosophila

(2016) Casey M Schneider-Mizell et al.   eLife

Synaptic transmission parallels neuromodulation in a central food-intake circuit

(2016) Philipp Schlegel et al.   eLife

The CNS connectome of a tadpole larva of Ciona intestinalis (L.) highlights sidedness in the brain of a chordate sibling

(2016) Kerrianne Ryan et al.   eLife

Lineage-associated tracts defining the anatomy of the Drosophila first instar larval brain

(2015) Volker Hartenstein et al.   DEVELOPMENTAL BIOLOGY

Imaging fictive locomotor patterns in larval Drosophila

(2015) Stefan R. Pulver et al.   JOURNAL OF NEUROPHYSIOLOGY

A multilevel multimodal circuit enhances action selection in Drosophila

(2015) Tomoko Ohyama et al.   NATURE

Even-Skipped+ Interneurons Are Core Components of a Sensorimotor Circuit that Maintains Left-Right Symmetric Muscle Contraction Amplitude

(2015) Ellie S. Heckscher et al.   NEURON

Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila

(2015) Toshihide Hige et al.   NEURON

Cooperative and Competitive Spreading Dynamics on the Human Connectome

(2015) Bratislav Mišić et al.   NEURON

Fast Approximate Quadratic Programming for Graph Matching

(2015) Joshua T. Vogelstein et al.   PLoS One

A Group of Segmental Premotor Interneurons Regulates the Speed of Axial Locomotion in Drosophila Larvae

(2014) Hiroshi Kohsaka et al.   CURRENT BIOLOGY

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Discovery of Brainwide Neural-Behavioral Maps via Multiscale Unsupervised Structure Learning

(2014) J. T. Vogelstein et al.   SCIENCE

A GAL4 Driver Resource for Developmental and Behavioral Studies on the Larval CNS of Drosophila

(2014) Hsing-Hsi Li et al.   Cell Reports

Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila

(2014) Yoshinori Aso et al.   eLife

The Rich Club of the C. elegans Neuronal Connectome

(2013) E. K. Towlson et al.   JOURNAL OF NEUROSCIENCE

From the connectome to brain function

(2013) Cornelia I Bargmann et al.   NATURE METHODS

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Top-down influences on visual processing

(2013) Charles D. Gilbert et al.   NATURE REVIEWS NEUROSCIENCE

High-Throughput Analysis of Stimulus-Evoked Behaviors in Drosophila Larva Reveals Multiple Modality-Specific Escape Strategies

(2013) Tomoko Ohyama et al.   PLoS One

Presynaptic gating of excitation in the dorsal raphe nucleus by GABA

(2013) M. Soiza-Reilly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Neuronal Circuits Underlying Persistent Representations Despite Time Varying Activity

(2012) Shaul Druckmann et al.   CURRENT BIOLOGY

A Consistent Adjacency Spectral Embedding for Stochastic Blockmodel Graphs

(2012) Daniel L. Sussman et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Structural neurobiology: missing link to a mechanistic understanding of neural computation

(2012) Winfried Denk et al.   NATURE REVIEWS NEUROSCIENCE

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Rich-Club Organization of the Human Connectome

(2011) M. P. van den Heuvel et al.   JOURNAL OF NEUROSCIENCE

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

The Physiology, Signaling, and Pharmacology of Dopamine Receptors

(2011) J.-M. Beaulieu et al.   PHARMACOLOGICAL REVIEWS

Two Alternating Motor Programs Drive Navigation in Drosophila Larva

(2011) Subhaneil Lahiri et al.   PLoS One

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Drosophila Larvae Establish Appetitive Olfactory Memories via Mushroom Body Neurons of Embryonic Origin

(2010) D. Pauls et al.   JOURNAL OF NEUROSCIENCE

Neuronal arithmetic

(2010) R. Angus Silver   NATURE REVIEWS NEUROSCIENCE

The Roles of Dopamine and Related Compounds in Reward-Seeking Behavior Across Animal Phyla

(2010) Andrew B. Barron et al.   Frontiers in Behavioral Neuroscience

Neural and behavioral mechanisms of olfactory perception

(2008) Rachel I Wilson   CURRENT OPINION IN NEUROBIOLOGY