Nanopore adaptive sampling for targeted mitochondrial genome sequencing and bloodmeal identification in hematophagous insects

Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore’s adaptive sequencing

(2022) Mike Marquet et al.   Scientific Reports

A rapid bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford nanopore adaptive sequencing method

(2022) Hang Cheng et al.   BRIEFINGS IN BIOINFORMATICS

Modernizing the Toolkit for Arthropod Bloodmeal Identification

(2021) Erin M. Borland et al.   Insects

Targeted long-read sequencing identifies missing disease-causing variation

(2021) Danny E. Miller et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Next generation sequencing approach for simultaneous identification of mosquitoes and their blood-meal hosts

(2021) Ephantus J. Muturi et al.   JOURNAL OF VECTOR ECOLOGY

The mitochondrial genome and Epigenome of the Golden lion Tamarin from fecal DNA using Nanopore adaptive sequencing

(2021) Nicole Wanner et al.   BMC GENOMICS

Ectoparasites of Cattle

(2020) Adalberto A. Pérez de León et al.   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region

(2020) Marta Giovanetti et al.   Cell Reports

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018

(2020) Sarah C. Hill et al.   PLoS Pathogens

Next-generation technologies applied to age-old challenges in Madagascar

(2020) Marina B. Blanco et al.   CONSERVATION GENETICS

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

(2020) Alexander Payne et al.   NATURE BIOTECHNOLOGY

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon

(2019) Felipe Gomes Naveca et al.   PLoS Neglected Tropical Diseases

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

A Rapid and Accurate MinION-Based Workflow for Tracking Species Biodiversity in the Field

(2019) Maestri et al.   Genes

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

(2019) Alexander Donath et al.   NUCLEIC ACIDS RESEARCH

Mosquito Immunobiology: The Intersection of Vector Health and Vector Competence

(2018) Lyric C. Bartholomay et al.   Annual Review of Entomology

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

DNA barcoding mosquitoes: advice for potential prospectors

(2018) NIGEL W. BEEBE   PARASITOLOGY

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

Complete mitogenome of Anopheles sinensis and mitochondrial insertion segments in the nuclear genomes of 19 mosquito species

(2018) Yi-Ran Ding et al.   PLoS One

Barcoding blood meals: New vertebrate-specific primer sets for assigning taxonomic identities to host DNA from mosquito blood meals

(2018) Lawrence E. Reeves et al.   PLoS Neglected Tropical Diseases

Blood Meal Source Characterization Using Illumina Sequencing in the Chagas Disease Vector Rhodnius pallescens (Hemiptera: Reduviidae) in Panamá

(2017) Troy J Kieran et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

(2017) Joshua Quick et al.   Nature Protocols

Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

(2016) Pedro E. Romero et al.   BMC EVOLUTIONARY BIOLOGY

The complete mitochondrial genome of the Atylotus miser (Diptera: Tabanomorpha: Tabanidae), with mitochondrial genome phylogeny of lower Brachycera (Orthorrhapha)

(2016) Kai Wang et al.   GENE

The mitochondrial genomes of Culex tritaeniorhynchus and Culex pipiens pallens (Diptera: Culicidae) and comparison analysis with two other Culex species

(2016) Qian-Chun Luo et al.   Parasites & Vectors

Vector competence of Aedes vexans (Meigen), Culex poicilipes (Theobald) and Cx. quinquefasciatus Say from Senegal for West and East African lineages of Rift Valley fever virus

(2016) El Hadji Ndiaye et al.   Parasites & Vectors

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

Unexpected spatiotemporal abundance of infected Culex restuans suggest a greater role as a West Nile virus vector for this native species

(2015) Brian J. Johnson et al.   INFECTION GENETICS AND EVOLUTION

Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample

(2015) Alex Crampton-Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temporal and Spatial Synchrony of Culex territans (Diptera: Culicidae) with Their Amphibian Hosts

(2015) Kristen Bartlett-Healy et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Host-Feeding Patterns of Potential Mosquito Vectors in Connecticut, USA: Molecular Analysis of Bloodmeals from 23 Species of Aedes, Anopheles, Culex, Coquillettidia, Psorophora, and Uranotaenia

(2015) Goudarz Molaei et al.   JOURNAL OF MEDICAL ENTOMOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A Taxonomic Checklist of the Mosquitoes of Iowa

(2014) Brendan M. Dunphy et al.   JOURNAL OF THE AMERICAN MOSQUITO CONTROL ASSOCIATION

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

(2013) Stephen L. Cameron   Annual Review of Entomology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Screening mammal biodiversity using DNA from leeches

(2012) Ida Bærholm Schnell et al.   CURRENT BIOLOGY

Molecular identification of bloodmeals and species composition inCulicoidesbiting midges

(2012) E. PETTERSSON et al.   MEDICAL AND VETERINARY ENTOMOLOGY

Bloodmeal Analysis Reveals Avian Plasmodium Infections and Broad Host Preferences of Culicoides (Diptera: Ceratopogonidae) Vectors

(2012) Diego Santiago-Alarcon et al.   PLoS One

Current progress in DNA barcoding and future implications for entomology

(2011) Utsugi JINBO et al.   ENTOMOLOGICAL SCIENCE

Complete sequences of mitochondria genomes of Aedes aegypti and Culex quinquefasciatus and comparative analysis of mitochondrial DNA fragments inserted in the nuclear genomes

(2011) Susanta K. Behura et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

New insights into molecular evolution: prospects from the Barcode of Life Initiative (BOLI)

(2010) Filipe O. Costa et al.   THEORY IN BIOSCIENCES

New perspectives in tracing vector-borne interaction networks

(2010) Elena Gómez-Díaz et al.   TRENDS IN PARASITOLOGY

Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies

(2009) Thaung Hlaing et al.   BMC GENETICS

Molecular methods for arthropod bloodmeal identification and applications to ecological and vector-borne disease studies

(2009) REBEKAH J. KENT   Molecular Ecology Resources

Disentangling Vector-Borne Transmission Networks: A Universal DNA Barcoding Method to Identify Vertebrate Hosts from Arthropod Bloodmeals

(2009) Miguel Alcaide et al.   PLoS One

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY

Identification of mosquito bloodmeals using mitochondrialcytochrome oxidase subunit Iandcytochrome bgene sequences

(2008) J. S. TOWNZEN et al.   MEDICAL AND VETERINARY ENTOMOLOGY