TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining
出版年份 2023 全文链接
标题
TomoTwin: generalized 3D localization of macromolecules in cryo-electron tomograms with structural data mining
作者
关键词
-
出版物
NATURE METHODS
Volume 20, Issue 6, Pages 871-880
出版商
Springer Science and Business Media LLC
发表日期
2023-05-16
DOI
10.1038/s41592-023-01878-z
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin
- (2022) Zhexin Wang et al. SCIENCE
- Structure of a bacterial Rhs effector exported by the type VI secretion system
- (2022) Patrick Günther et al. PLoS Pathogens
- VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms
- (2022) Yu Hao et al. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
- Solving the nuclear pore puzzle
- (2022) Thomas U. Schwartz SCIENCE
- Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex
- (2022) Xuechen Zhu et al. SCIENCE
- AI-based structure prediction empowers integrative structural analysis of human nuclear pores
- (2022) Shyamal Mosalaganti et al. SCIENCE
- Isotropic reconstruction for electron tomography with deep learning
- (2022) Yun-Tao Liu et al. Nature Communications
- Parallel cryo electron tomography on in situ lamellae
- (2022) Fabian Eisenstein et al. NATURE METHODS
- Multi-particle cryo-EM refinement with M visualizes ribosome-antibiotic complex at 3.5 Å in cells
- (2021) Dimitry Tegunov et al. NATURE METHODS
- The molecular basis for sarcomere organization in vertebrate skeletal muscle
- (2021) Zhexin Wang et al. CELL
- A streamlined workflow for automated cryo focused ion beam milling
- (2021) Sebastian Tacke et al. JOURNAL OF STRUCTURAL BIOLOGY
- Molecular-scale visualization of sarcomere contraction within native cardiomyocytes
- (2021) Laura Burbaum et al. Nature Communications
- Locating macromolecular assemblies in cells by 2D template matching with cisTEM
- (2021) Bronwyn A Lucas et al. eLife
- In situ cryo-ET structure of phycobilisome–photosystem II supercomplex from red alga
- (2021) Meijing Li et al. eLife
- New tools for automated cryo-EM single-particle analysis in RELION-4.0
- (2021) Dari Kimanius et al. BIOCHEMICAL JOURNAL
- Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms
- (2021) Emmanuel Moebel et al. NATURE METHODS
- Live Analysis and Reconstruction of Single-Particle Cryo-Electron Microscopy Data with CryoFLARE
- (2020) Andreas D. Schenk et al. Journal of Chemical Information and Modeling
- Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography
- (2020) Felix R. Wagner et al. Nature Protocols
- Assembly intermediates of orthoreovirus captured in the cell
- (2020) Geoff Sutton et al. Nature Communications
- A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue
- (2019) Miroslava Schaffer et al. NATURE METHODS
- Deep Metric Learning: A Survey
- (2019) Kaya et al. Symmetry-Basel
- Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
- (2019) D. Maluenda et al. Acta Crystallographica Section D-Structural Biology
- Real-time cryo-electron microscopy data preprocessing with Warp
- (2019) Dimitry Tegunov et al. NATURE METHODS
- Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs
- (2019) Tristan Bepler et al. NATURE METHODS
- Structure of a Tc holotoxin pore provides insights into the translocation mechanism
- (2019) Daniel Roderer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Advances in cryo-electron tomography for biology and medicine
- (2018) Roman I. Koning et al. ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER
- Deep Correlated Holistic Metric Learning for Sketch-Based 3D Shape Retrieval
- (2018) Guoxian Dai et al. IEEE TRANSACTIONS ON IMAGE PROCESSING
- Tc toxin activation requires unfolding and refolding of a β-propeller
- (2018) Christos Gatsogiannis et al. NATURE
- New tools for automated high-resolution cryo-EM structure determination in RELION-3
- (2018) Jasenko Zivanov et al. eLife
- Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging
- (2017) Wim J.H. Hagen et al. JOURNAL OF STRUCTURAL BIOLOGY
- High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE
- (2017) Toshio Moriya et al. Jove-Journal of Visualized Experiments
- In Situ Cryo-Electron Tomography: A Post-Reductionist Approach to Structural Biology
- (2016) Shoh Asano et al. JOURNAL OF MOLECULAR BIOLOGY
- Resolving macromolecular structures from electron cryo-tomography data using subtomogram averaging in RELION
- (2016) Tanmay A M Bharat et al. Nature Protocols
- Expression, purification, and characterization of recombinant human H-chain ferritin
- (2016) Wenyan Zou et al. PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY
- Cryo-electron tomography: The challenge of doing structural biology in situ
- (2013) Vladan Lučić et al. JOURNAL OF CELL BIOLOGY
- Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments
- (2012) Daniel Castaño-Díez et al. JOURNAL OF STRUCTURAL BIOLOGY
- Simulation of transmission electron microscope images of biological specimens
- (2011) H. RULLGÅRD et al. JOURNAL OF MICROSCOPY
- PyTom: A python-based toolbox for localization of macromolecules in cryo-electron tomograms and subtomogram analysis
- (2011) Thomas Hrabe et al. JOURNAL OF STRUCTURAL BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now