Comparative genomics reveals unique features of two Babesia motasi subspecies: Babesia motasi lintanensis and Babesia motasi hebeiensis

Establishment and Application of an Indirect Enzyme-Linked Immunosorbent Assay for Measuring GPI-Anchored Protein 52 (P52) Antibodies in Babesia gibsoni-Infected Dogs

(2022) Qin Liu et al.   Animals

How Apicomplexa Parasites Secrete and Build Their Invasion Machinery

(2022) Marta Mendonça Cova et al.   Annual Review of Microbiology

Comparative genomic analysis of Babesia duncani responsible for human babesiosis

(2022) Jinming Wang et al.   BMC BIOLOGY

The AMA1-RON complex drives Plasmodium sporozoite invasion in the mosquito and mammalian hosts

(2022) Priyanka Fernandes et al.   PLoS Pathogens

Inhibitors of ApiAP2 protein DNA binding exhibit multistage activity against Plasmodium parasites

(2022) Timothy James Russell et al.   PLoS Pathogens

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gliding motility of Plasmodium merozoites

(2021) Kazuhide Yahata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Babesia microti Immunoreactive Rhoptry-Associated Protein-1 Paralogs Are Ancestral Members of the Piroplasmid-Confined RAP-1 Family

(2021) Reginaldo G. Bastos et al.   Pathogens

RepeatModeler2 for automated genomic discovery of transposable element families

(2020) Jullien M. Flynn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissecting the role of PfAP2-G in malaria gametocytogenesis

(2020) Gabrielle A. Josling et al.   Nature Communications

Insights into the phylogenetic relationships and drug targets of Babesia isolates infective to small ruminants from the mitochondrial genomes

(2020) Xiaoxing Wang et al.   Parasites & Vectors

Comparative analysis of gene expression between Babesia bovis blood stages and kinetes allowed by improved genome annotation

(2020) Massaro W. Ueti et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Babesia Life Cycle – When Phylogeny Meets Biology

(2019) Marie Jalovecka et al.   TRENDS IN PARASITOLOGY

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Vaccination against babesiosis using recombinant GPI-anchored proteins

(2019) Sarah Nathaly Wieser et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of apicoplast genomes of Babesia infective to small ruminants in China

(2019) Xiaoxing Wang et al.   Parasites & Vectors

Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena

(2019) Jie Xiong et al.   PLOS BIOLOGY

Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes

(2019) Luis Miguel González et al.   PLoS Neglected Tropical Diseases

NextPolish: a fast and efficient genome polishing tool for long-read assembly

(2019) Jiang Hu et al.   BIOINFORMATICS

Evaluation of Babesia gibsoni GPI-anchored Protein 47 (BgGPI47-WH) as a Potential Diagnostic Antigen by Enzyme-Linked Immunosorbent Assay

(2019) Xueyan Zhan et al.   Frontiers in Veterinary Science

NanoPack: visualizing and processing long-read sequencing data

(2018) Wouter De Coster et al.   BIOINFORMATICS

Human Babesiosis Caused by a Babesia crassa–Like Pathogen: A Case Series

(2018) Na Jia et al.   CLINICAL INFECTIOUS DISEASES

Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

(2018) Ulrike Böhme et al.   GENOME RESEARCH

Spherical Body Protein 2 truncated copy 11 as a specific Babesia bovis attenuation marker

(2018) Gina M. Gallego-Lopez et al.   Parasites & Vectors

Discovery of a recombinant Babesia canis supernatant antigen that protects dogs against virulent challenge infection

(2018) K. Moubri et al.   VETERINARY PARASITOLOGY

Up-regulated expression of spherical body protein 2 truncated copy 11 in Babesia bovis is associated with reduced cytoadhesion to vascular endothelial cells

(2018) Gina M. Gallego-Lopez et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Gliding motility powers invasion and egress in Apicomplexa

(2017) Karine Frénal et al.   NATURE REVIEWS MICROBIOLOGY

LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

(2017) Shujun Ou et al.   PLANT PHYSIOLOGY

A targeted immunomic approach identifies diagnostic antigens in the human pathogen Babesia microti

(2016) Emmanuel Cornillot et al.   TRANSFUSION

Shared elements of host-targeting pathways among apicomplexan parasites of differing lifestyles

(2015) Karell G. Pellé et al.   CELLULAR MICROBIOLOGY

Disruption of Parasitehmgb2Gene Attenuates Plasmodium berghei ANKA Pathogenicity

(2015) Sylvie Briquet et al.   INFECTION AND IMMUNITY

Babesiosis

(2015) Edouard G. Vannier et al.   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

RIFINs are adhesins implicated in severe Plasmodium falciparum malaria

(2015) Suchi Goel et al.   NATURE MEDICINE

Bayesian molecular clock dating of species divergences in the genomics era

(2015) Mario dos Reis et al.   NATURE REVIEWS GENETICS

Dissecting the interface between apicomplexan parasite and host cell: Insights from a divergent AMA–RON2 pair

(2015) Michelle L. Parker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ApiAP2 Factors as Candidate Regulators of Stochastic Commitment to Merozoite Production in Theileria annulata

(2015) Marta Pieszko et al.   PLoS Neglected Tropical Diseases

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The evolutionary dynamics of variant antigen genes in Babesia reveal a history of genomic innovation underlying host-parasite interaction

(2014) A. P. Jackson et al.   NUCLEIC ACIDS RESEARCH

Sequence comparison and phylogenetic analysis by the Maximum Likelihood method of ribosome-inactivating proteins from angiosperms

(2014) Antimo Di Maro et al.   PLANT MOLECULAR BIOLOGY

The glycosylphosphatidylinositol-anchored protein repertoire of Babesia bovis and its significance for erythrocyte invasion

(2014) Anabel Elisa Rodriguez et al.   Ticks and Tick-Borne Diseases

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts

(2014) Thomas D. Otto et al.   Nature Communications

Key molecular events during host cell invasion by Apicomplexan pathogens

(2013) Pushkar Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Cytochrome c oxidase subunit III (COX3) gene, an informative marker for phylogenetic analysis and differentiation of Babesia species in China

(2013) Zhancheng Tian et al.   INFECTION GENETICS AND EVOLUTION

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments

(2012) Zhang Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Phylogenetic analysis of Babesia species in China based on cytochrome b (COB) gene

(2012) Zhancheng Tian et al.   INFECTION GENETICS AND EVOLUTION

TheToxoplasmanuclear factor TgAP2XI-4 controls bradyzoite gene expression and cyst formation

(2012) Robert Walker et al.   MOLECULAR MICROBIOLOGY

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Sequencing of the smallest Apicomplexan genome from the human pathogen Babesia microti†

(2012) Emmanuel Cornillot et al.   NUCLEIC ACIDS RESEARCH

A recently identified ovine Babesia in China: Serology and sero-epidemiology

(2012) Guiquan Guan et al.   PARASITOLOGY INTERNATIONAL

Gliding Motility of Babesia bovis Merozoites Visualized by Time-Lapse Video Microscopy

(2012) Masahito Asada et al.   PLoS One

BQP35 is a novel member of the intrinsically unstructured protein (IUP) family which is a potential antigen for the sero-diagnosis of Babesia sp. BQ1 (Lintan) infection

(2012) Guiquan Guan et al.   VETERINARY PARASITOLOGY

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

The moving junction of apicomplexan parasites: a key structure for invasion

(2011) Sébastien Besteiro et al.   CELLULAR MICROBIOLOGY

Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times

(2011) M. d. Reis et al.   MOLECULAR BIOLOGY AND EVOLUTION

A novel neutralization sensitive and subdominant RAP-1-related antigen (RRA) is expressed by Babesia bovis merozoites

(2011) CARLOS E. SUAREZ et al.   PARASITOLOGY

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Binding ofPlasmodiummerozoite proteins RON2 and AMA1 triggers commitment to invasion

(2011) Prakash Srinivasan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The third described case of transfusion-transmitted Babesia duncani

(2011) Evan M. Bloch et al.   TRANSFUSION

The RON2-AMA1 Interaction is a Critical Step in Moving Junction-Dependent Invasion by Apicomplexan Parasites

(2011) Mauld Lamarque et al.   PLoS Pathogens

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

Functional Dissection of the Apicomplexan Glideosome Molecular Architecture

(2010) Karine Frénal et al.   Cell Host & Microbe

Zoonotic babesiosis: Overview of the disease and novel aspects of pathogen identity

(2010) Jeremy Gray et al.   Ticks and Tick-Borne Diseases

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Structure of thePlasmodium falciparumCircumsporozoite Protein, a Leading Malaria Vaccine Candidate

(2009) Matthew L. Plassmeyer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Course of infection byBabesiasp. BQ1 (Lintan) andB. divergensin sheep depends on the production of IFNγ and IL10

(2009) G. GUAN et al.   PARASITE IMMUNOLOGY

Babesia bovis contains an abundant parasite-specific protein-free glycerophosphatidylinositol and the genes predicted for its assembly

(2009) Anabel Elisa Rodríguez et al.   VETERINARY PARASITOLOGY

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Differentiation of two ovine Babesia based on the ribosomal DNA internal transcribed spacer (ITS) sequences

(2008) Qingli Niu et al.   EXPERIMENTAL PARASITOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY