Reconstruction and validation of a constraint-based metabolic network model for bone marrow-derived mesenchymal stem cells

New paradigms for metabolic modeling of human cells

(2015) Adil Mardinoglu et al.   CURRENT OPINION IN BIOTECHNOLOGY

How metabolites modulate metabolic flux

(2015) Andre Wegner et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reconstruction of genome-scale human metabolic models using omics data

(2015) Jae Yong Ryu et al.   Integrative Biology

Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

(2015) Pouyan Ghaffari et al.   Scientific Reports

An update of human mesenchymal stem cell biology and their clinical uses

(2014) Walid Zaher et al.   ARCHIVES OF TOXICOLOGY

Reconstruction of a generic metabolic network model of cancer cells

(2014) Mahdieh Hadi et al.   Molecular BioSystems

Optimizing genome-scale network reconstructions

(2014) Jonathan Monk et al.   NATURE BIOTECHNOLOGY

Constraint-based models predict metabolic and associated cellular functions

(2014) Aarash Bordbar et al.   NATURE REVIEWS GENETICS

In-Silico Prediction of Key Metabolic Differences between Two Non-Small Cell Lung Cancer Subtypes

(2014) Alberto Rezola et al.   PLoS One

Mesenchymal stem cell therapy and acute graft-versus-host disease: a review

(2014) Bruna Amorin et al.   Human Cell

Basic concepts and principles of stoichiometric modeling of metabolic networks

(2013) Timo R. Maarleveld et al.   Biotechnology Journal

Immunobiology of mesenchymal stem cells

(2013) S Ma et al.   CELL DEATH AND DIFFERENTIATION

Metabolically re-modeling the drug pipeline

(2013) Matthew A Oberhardt et al.   CURRENT OPINION IN PHARMACOLOGY

Fibrosis and Subsequent Cytopenias Are Associated with Basic Fibroblast Growth Factor-Deficient Pluripotent Mesenchymal Stromal Cells in Large Granular Lymphocyte Leukemia

(2013) A. W. Mailloux et al.   JOURNAL OF IMMUNOLOGY

A community-driven global reconstruction of human metabolism

(2013) Ines Thiele et al.   NATURE BIOTECHNOLOGY

The meaning, the sense and the significance: translating the science of mesenchymal stem cells into medicine

(2013) Paolo Bianco et al.   NATURE MEDICINE

Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious

(2013) A. Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flux balance analysis of CHO cells before and after a metabolic switch from lactate production to consumption

(2012) Verónica S. Martínez et al.   BIOTECHNOLOGY AND BIOENGINEERING

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

(2012) Yuliang Wang et al.   BMC Systems Biology

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Mathematical optimization applications in metabolic networks

(2012) Ali R. Zomorrodi et al.   METABOLIC ENGINEERING

Human osteosarcoma CD49f−CD133+ cells: impaired in osteogenic fate while gain of tumorigenicity

(2012) M Ying et al.   ONCOGENE

Calcium Dependent CAMTA1 in Adult Stem Cell Commitment to a Myocardial Lineage

(2012) Barbara Muller-Borer et al.   PLoS One

A quantitative proteomic and transcriptomic comparison of human mesenchymal stem cells from bone marrow and umbilical cord vein

(2012) Helen Cristina Miranda et al.   PROTEOMICS

Continuous and Uninterrupted Oxygen Tension Influences the Colony Formation and Oxidative Metabolism of Human Mesenchymal Stem Cells

(2012) Girish Pattappa et al.   TISSUE ENGINEERING PART C-METHODS

Immunomodulatory properties and therapeutic application of mesenchymal stem cells

(2011) M. Shi et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Using the reconstructed genome-scale human metabolic network to study physiology and pathology

(2011) A. Bordbar et al.   JOURNAL OF INTERNAL MEDICINE

Predicting selective drug targets in cancer through metabolic networks

(2011) O. Folger et al.   Molecular Systems Biology

Patterns of Amino Acid Metabolism by Proliferating Human Mesenchymal Stem Cells

(2011) Gustavo A. Higuera et al.   TISSUE ENGINEERING PART A

Systematizing the generation of missing metabolic knowledge

(2010) Jeffrey D. Orth et al.   BIOTECHNOLOGY AND BIOENGINEERING

The metabolism of human mesenchymal stem cells during proliferation and differentiation

(2010) Girish Pattappa et al.   JOURNAL OF CELLULAR PHYSIOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks inEscherichia coliandMycobacterium tuberculosis

(2010) Sriram Chandrasekaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Advances in mesenchymal stem cell-mediated gene therapy for cancer

(2010) Roisin M Dwyer et al.   Stem Cell Research & Therapy

Genome-scale modeling and in silico analysis of mouse cell metabolic network

(2009) Suresh Selvarasu et al.   Molecular BioSystems

Predicting metabolic biomarkers of human inborn errors of metabolism

(2009) Tomer Shlomi et al.   Molecular Systems Biology

Applications of genome-scale metabolic reconstructions

(2009) Matthew A Oberhardt et al.   Molecular Systems Biology

Growth, Metabolism, and Growth Inhibitors of Mesenchymal Stem Cells

(2009) Deborah Schop et al.   TISSUE ENGINEERING PART A

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli

(2008) Markus W. Covert et al.   BIOINFORMATICS

Cell and gene therapy using mesenchymal stem cells (MSCs)

(2008) Keiya Ozawa et al.   JOURNAL OF AUTOIMMUNITY

Gene Expression Profiling of Human Mesenchymal Stem Cells for Identification of Novel Markers in Early- and Late-Stage Cell Culture

(2008) Shihori Tanabe et al.   JOURNAL OF BIOCHEMISTRY

Network-based prediction of human tissue-specific metabolism

(2008) Tomer Shlomi et al.   NATURE BIOTECHNOLOGY

Effects of Oxygen Transport on 3-D Human Mesenchymal Stem Cell Metabolic Activity in Perfusion and Static Cultures: Experiments and Mathematical Model

(2005) Feng Zhao et al.   BIOTECHNOLOGY PROGRESS